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Clone Read LE_HBa0029A15_SP6_91804

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0029A15_SP6_91804
Primer
SP6
ID from Seq. Facility
LE_HBa_029_A15-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
241 trimmed for vector and quality, 819 raw
Genbank Accession
DU054348
Sequence
>LE_HBa0029A15_SP6_91804 (raw untrimmed)
AACCGCACCCTTTTTTTATAGGAGGAATGTCCCTTGGACTAATACTGGCGGTAGTATGCTATCTTACCCAACAAAGCTCCTTATTTCTGGACACATTAGT
AGGTCTTACCAAATTCTTCACTGTCTCAATCTTAGAAGGGTCCACCATCACTCCATCCTTAGAAACCACGTGCCCCAAGAAGGACACTGCATCTAGCTAA
AACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATATCATTCTCAAATGCTCTTCATGTTCCTTCTTGCTCTTTGAGTATA
CCAATATATCATCTATAAATACTATCACGAAGAGGTCCAAATATGGCTTAAAAATCCCATTTATCAAGATTCTGAACGCAGTATGGGCATTCGTAAGACC
AAAAGACATCACTATTATTTTGTAATGCCCATACCTCGTTCAAAAATCAATCTTAAAAAATGTGCTGTCCGTATTTCGATTGTTGAGAACTGGAGCTCAA
GACAATTCTTAGAGAAGACATAGCTCCTTGCAACTGATCAATCGTCATCGCTCCCGGAAAGGATACTTTTCTTATAGTGTTTTGTAAGTAGTCTGAGTCT
GAGCTTTCTCAACCATCAACTTTTCTATTCTTATTACCGATCACCTAAGGGATTAATTGTATATTAATCTTTTTTTTATATCTCGATTGTCGTCTTTCTC
CATCTCTAAGGTCATAAATCAGTCTAATAATGCCGAATATTGAATATACATAAGAAACATATTTAATGTGAATAGTATTCGCCGATATGTAAACCACACC
TGACTCCCTCCCAGTACCG
>LE_HBa0029A15_SP6_91804 (trimmed for quality and cloning vector)
CAACAAAGCTCCTTATTTCTGGACACATTAGTAGGTCTTACCAAATTCTTCACTGTCTCAATCTTAGAAGGGTCCACCATCACTCCATCCTTAGAAACCA
CGTGCCCCAAGAAGGACACTGCATCTAGCTAAAACTCACACTTAGAGAACTTGGCATAAAGCTTTTTCTCCCTCAACATTTCCAATATCATTCTCAAATG
CTCTTCATGTTCCTTCTTGCTCTTTGAGTATACCAATATAT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.940871
Expected error %
1.1217
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38745.1| Score 106 E Value 2e-22 Identity 20.50% Align. Length 218bp (90.46%) Frame 1
putative polyprotein, 3'-partial [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAO45752.1| Score 104 E Value 7e-22 Identity 23.30% Align. Length 218bp (90.46%) Frame 1
pol protein [Cucumis melo]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0029A15
Clone
Clone name
hba-29a15
LE_HBa0029A15
P029A15
Clone type
BAC
Contamination
none
Estimated length
142,220
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found