Clone Read LE_HBa0007M18_T7_91619

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0007M18_T7_91619
Primer
T7
ID from Seq. Facility
LE_HBa_007_M18-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
588 trimmed for vector and quality, 920 raw
Sequence
>LE_HBa0007M18_T7_91619 (raw untrimmed)
TCAAACGGGTACCGGGGAGATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTAACAAGTGTTCAATCTTTCGCCCTTTGAGCCAGATTTTGTGACAGAT
CTAGCTAAGGGGGAGTTTTTAACTGAACTCTTTAATAGACAAGCCGGAGGTCAACCTTATGCAGATCAGGATGGTAGCGGGACCTCAACTCCTCATCCTG
CTAATTATGCCGTCTCACCTAGAGAGCTGACTTTGCGGCTGCACGAAGTCCTCCAAACACAATTAGAAGACCGGGTCAAGGAGCTTGAGATGGCACTTCA
GAACAGTGAAAGGAAAGTTCGTTATATGGAAGCAGAACTTGTAAGTTCATGGAGGGACTCGTCAAATAGTGAAGGGGGTTCTTCTTCCACCCATGGTAGT
CCTGTAACTAAAGTTGAACAACGTACAGCAGACCAGCCAATGACAATCAACTTACGCGGGGATGCTTTAGATGCATATAACGAGGCTTATAACGTGTTCA
CAAGGTTAAATTCAGAGGAGGAGGATGTTGCTGTTGCACCCAGGAGTTATGGACATCAACCATCAAGAGAACTCGCGTTCACGTTGAGCAATACTTTGAC
TGGATTGAAAATGATAGGATGAATGATTAAAGTGATGATGACATGGAAAATTTGTTAATTAGGTATAAACTTAAGAAAGCAAAGAATGGATCCTCAGCAT
TTTTAAATGTGCAGAAATCATCGTTTTTCCTTGATGATAATGAACATTGATACATTCACACCTTCTACCTAGTGAAATCTTTTTATAGAATTTCAACACA
CTTGATGCTATTCATCTACCATATCTCTTCCATTTTTGCCTGCCTCCTGCATAACACACGCTCATCATAGCCTCAACTCCCAGGCCCCTTCACTCACTGT
TTCAAACCCACAATTCACTC
>LE_HBa0007M18_T7_91619 (trimmed for quality and cloning vector)
AGCTTTAACAAGTGTTCAATCTTTCGCCCTTTGAGCCAGATTTTGTGACAGATCTAGCTAAGGGGGAGTTTTTAACTGAACTCTTTAATAGACAAGCCGG
AGGTCAACCTTATGCAGATCAGGATGGTAGCGGGACCTCAACTCCTCATCCTGCTAATTATGCCGTCTCACCTAGAGAGCTGACTTTGCGGCTGCACGAA
GTCCTCCAAACACAATTAGAAGACCGGGTCAAGGAGCTTGAGATGGCACTTCAGAACAGTGAAAGGAAAGTTCGTTATATGGAAGCAGAACTTGTAAGTT
CATGGAGGGACTCGTCAAATAGTGAAGGGGGTTCTTCTTCCACCCATGGTAGTCCTGTAACTAAAGTTGAACAACGTACAGCAGACCAGCCAATGACAAT
CAACTTACGCGGGGATGCTTTAGATGCATATAACGAGGCTTATAACGTGTTCACAAGGTTAAATTCAGAGGAGGAGGATGTTGCTGTTGCACCCAGGAGT
TATGGACATCAACCATCAAGAGAACTCGCGTTCACGTTGAGCAATACTTTGACTGGATTGAAAATGATAGGATGAATGATTAAAGTGA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.981233
Expected error %
1.45984
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g61040.1 Score 101 E Value 3e-22 Identity 13.20% Align. Length 446bp (75.85%) Frame 1
68418.m07660 expressed protein
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g08010.1 Score 91 E Value 5e-19 Identity 13.10% Align. Length 449bp (76.36%) Frame 1
68418.m00932 expressed protein condensin subunit SMC4, Drosophila melanogaster, EMBL:AF186472
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAB10367.1| Score 101 E Value 1e-20 Identity 13.20% Align. Length 446bp (75.85%) Frame 1
unnamed protein product [Arabidopsis thaliana] ref|NP_200912.1| expressed protein [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB62613.1| Score 91 E Value 2e-17 Identity 13.10% Align. Length 449bp (76.36%) Frame 1
putative protein [Arabidopsis thaliana] ref|NP_196418.1| expressed protein [Arabidopsis thaliana] pir||T45626 hypothetical protein F13G24.210 - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0007M18
Clone
Clone name
hba-7m18
LE_HBa0007M18
P007M18
Clone type
BAC
Contamination
none
Estimated length
92,454
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found