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Clone Read LE_HBa0007H12_SP6_91366

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0007H12_SP6_91366
Primer
SP6
ID from Seq. Facility
LE_HBa_007_H12-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
626 trimmed for vector and quality, 812 raw
Sequence
>LE_HBa0007H12_SP6_91366 (raw untrimmed)
TTTTTTGTGGTCATGATGTCTTAATTGAACCCTTTTGGTTACTACCCCGGTGGCTGACTCCGTTATTGCTCCTAGAGTCTTTAGGATTTGTCCCATATTG
TTCTCCAATAAAGTTACATTGGTCGATTTGGTAGAACTTGATATGTTGGACTTTGATGTCATATTGGGGATGGATTAGTTACATTCTTTTTTTGCTTCCA
TTGATTGTAGAGCGAGGGTATTTATGTTCCAGTTCCCTAACGACCCCGTCTTATAGTGGAAGGGGGGAAACTCAATCCCTAGAGGTCTAATCATTTCGTG
TCTAAATCTTGTAAGATAATTTCTAAGGGATGTATCTACCATATTGTGAAGGTCAAGGTCCTATAATCAAAAGCTCCTCCTTTAGATTTTGTCCCCGTAG
TGAAGGATTTTTTGGAAGTCTTTCCCAATGACTTAACTAAAATTTATACCGAACGGAAAATAGATTTAGACAGATTTTTTGCCACATACGAAACCCATTT
CAATTCCTCCTTATCAGATGGATCCAGCCATGTTGAAAGCGTGGAAGGCTCAACTCAAGGATTTTCTTAACAAGGGTTTTAGACAACCATGCATATCTCC
ATGGATCGCTACGGTTTTTTATTTGTGAAAAAGAAAAAATGGGTTTCTTAGAATATGCATTAACTACCAGCAATTGAACAAGGTCACCATAATGAATAGG
TATCCTCCCCATAGGATTTTGATTTTGGGTTGATTAATTCCATGGTGTGATTTTTCTCTTCAAAAATTATTTTTAAGGTCCTGATATTACCAACTTAGGT
TGAAGATGTTTA
>LE_HBa0007H12_SP6_91366 (trimmed for quality and cloning vector)
GATGTCTTAATTGAACCCTTTTGGTTACTACCCCGGTGGCTGACTCCGTTATTGCTCCTAGAGTCTTTAGGATTTGTCCCATATTGTTCTCCAATAAAGT
TACATTGGTCGATTTGGTAGAACTTGATATGTTGGACTTTGATGTCATATTGGGGATGGATTAGTTACATTCTTTTTTTGCTTCCATTGATTGTAGAGCG
AGGGTATTTATGTTCCAGTTCCCTAACGACCCCGTCTTATAGTGGAAGGGGGGAAACTCAATCCCTAGAGGTCTAATCATTTCGTGTCTAAATCTTGTAA
GATAATTTCTAAGGGATGTATCTACCATATTGTGAAGGTCAAGGTCCTATAATCAAAAGCTCCTCCTTTAGATTTTGTCCCCGTAGTGAAGGATTTTTTG
GAAGTCTTTCCCAATGACTTAACTAAAATTTATACCGAACGGAAAATAGATTTAGACAGATTTTTTGCCACATACGAAACCCATTTCAATTCCTCCTTAT
CAGATGGATCCAGCCATGTTGAAAGCGTGGAAGGCTCAACTCAAGGATTTTCTTAACAAGGGTTTTAGACAACCATGCATATCTCCATGGATCGCTACGG
TTTTTTATTTGTGAAAAAGAAAAAAT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.953341
Expected error %
0.225383
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39297.1| Score 157 E Value 2e-37 Identity 15.40% Align. Length 596bp (95.21%) Frame 1
putative gag-pol protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 157 E Value 3e-37 Identity 15.20% Align. Length 596bp (95.21%) Frame 1
putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0007H12
Clone
Clone name
hba-7h12
LE_HBa0007H12
P007H12
Clone type
BAC
Contamination
none
Estimated length
90,898
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found