Clone Read LE_HBa0150K04_SP6_90726

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0150K04_SP6_90726
Primer
SP6
ID from Seq. Facility
LE_HBa_150_K04-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
368 trimmed for vector and quality, 836 raw
Genbank Accession
DU058826
Sequence
>LE_HBa0150K04_SP6_90726 (raw untrimmed)
AACGTTGAAGCGGCGCAAGTAGACAAAAGAATATGCAGATCGAAAGGTTAGAGACTTAGAGTTCATGGAGGGTGAACAAGTCTTGTTGAAAGTTTCACCA
ATGAAAGGGGTGATGCGGTTTGGTAAAAGGGGTAAACTAAGTCCAAGGTACATTGGACCATTTGAAGTACTTAAGCGAGTAGGGGAGGTGGCTTATGAGT
TAGTCTTGCCTCCAGGGCTGTCCGGAGTACATCCGGTATTTCATGTGTCGATGTTGAAAAGATACCATGGGGATGGAAACTACATTATCCGTTGGGATTC
AGTTTTGCTTGATGAGAACTTGTCTTATGAGGAGGAGCCTGTTGCCATTCTAGATAAAGAAATTCGCAAGTTGAGATCAAGGGAGATTGCATGCATCAAA
GTTCAATGGAATAATCGACCCGTTGAAGAAGCCGCTTGTGATATTGGAGGCTGTTATGCCAGAAAAATACCCATCCCCGTTCTCATGTTCTGGTATTCCT
TTTCTCCCTTGTTTTCCTCCATGTGATCGCTCCCGGGATTAGCTTTGAGTCTATTGGGTTCGAAAAGTATAAATATGCTATTTTAGATAGGATTATATGT
TGGTGTTTTTTTGTTTTAAATTTTGTTGCTATTTTTTTTCCTCATTTTGATATTATGCGCTACCACCGGTCCTTCTTATCTTTGTTTTTGTTTCAGTACT
TATCTTTTTCTTATTTATTTATTATTATATTTTTGATTGCTATCTAAATTTATTTTTTTTATTCAATCTTTTTTAGTATACGCTGAATCTATATCAGATA
TCTAAATTTTGGACGTGGATTAGGTCTTTTTTAATT
>LE_HBa0150K04_SP6_90726 (trimmed for quality and cloning vector)
AAAGAATATGCAGATCGAAAGGTTAGAGACTTAGAGTTCATGGAGGGTGAACAAGTCTTGTTGAAAGTTTCACCAATGAAAGGGGTGATGCGGTTTGGTA
AAAGGGGTAAACTAAGTCCAAGGTACATTGGACCATTTGAAGTACTTAAGCGAGTAGGGGAGGTGGCTTATGAGTTAGTCTTGCCTCCAGGGCTGTCCGG
AGTACATCCGGTATTTCATGTGTCGATGTTGAAAAGATACCATGGGGATGGAAACTACATTATCCGTTGGGATTCAGTTTTGCTTGATGAGAACTTGTCT
TATGAGGAGGAGCCTGTTGCCATTCTAGATAAAGAAATTCGCAAGTTGAGATCAAGGGAGATTGCATG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.954675
Expected error %
0.112235
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAV31169.1| Score 163 E Value 1e-39 Identity 20.90% Align. Length 362bp (98.37%) Frame 2
putative polyprotein [Solanum tuberosum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 163 E Value 1e-39 Identity 20.90% Align. Length 362bp (98.37%) Frame 2
putative polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0150K04
Clone
Clone name
hba-150k4
LE_HBa0150K04
P150K04
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found