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Clone Read LE_HBa0149L01_SP6_90000

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0149L01_SP6_90000
Primer
SP6
ID from Seq. Facility
LE_HBa_149_L01-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
13 trimmed for vector and quality, 1042 raw
Sequence
>LE_HBa0149L01_SP6_90000 (raw untrimmed)
CACCCTTCGGCAGCGCAGCCGCCGCCCGCCGCCTCCGCGGAGGTGGACGTGGAGAGCAGAGGGGATATGGTGACGGACAGTATGTCCCGATGGGAATCTG
GTTCGCATGCGTTTCAAGAAATCATTTTCCTGCATATCATTGGACTGAGGGCAGCTACTATCGCGAGCACTCTTTATTTTCTCTTTGTTTCTTTATTTAG
TCCGTAGGTTTTTATTAGCCTAAAACGGTCTATGTTAGAAGTGGTGTTTTAGTTTTTATTCTTTTTTTTTTTTTTTTTTTTTGTCTTTTTTTTATTTTTT
TTTTTTTTATTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTGTTTTTTTTTTCTTTTTACTTTTTTTTTTTTCTTATTGTTTT
TAGTGGTGAGTAATTCCTTGTAATCTCATCCTTCGTTAAGTGGTAGTTGTGAATGGAGTGCTGATTGGCCGGTGGTATATTGCGTTGACAGACCACTTTT
TTTTTTATTCTTTTTGCGATTCTCGCAGTGTAGTGCTTGTACGTGATTGGTAGTCACTTTCTTGTATTATGCACTTTCTGATACCCGCACATGACTGCAG
GCGGCATGATGGTACATGCCAGGATGGTTTCTCGTTCGGCATTCTCCCGGACCGGGTGGGGACGGGCTGTGCGCTGTCGATGATACAAGTTGGTTGGGGT
GGCAAATGGTTCATATTCTGGGATCTTGCGGTCAAAGTCTCGCCCGATACTGTCTGTCTTTTGATATCGTTGTGTAATTCTGTTTCTTACCTTGCTTTGC
TCTGTCTCTTATTTCGAAACAGCTTGTCCGTCATTGTGGTGCTGCTGCTCCTGGACTCCTTCTGCTCTGTTTGCAAGGGTGCCGCCTTGTCGATGCCAGG
TTCCGCTGCGCCCGGTCTACTGGACTCGGACTATCACCATGTAGTGAATTGCTGTCTGAGTATGTTTGGTGAAAACCATTGGTTTGTAGATGGCGCGCGT
GCGGTGTGGCTTTCCCACGATCCTGGCCTGTTCTGGACCTTG
>LE_HBa0149L01_SP6_90000 (trimmed for quality and cloning vector)
TTTTTTTTTTTTT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.673323
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0149L01
Clone
Clone name
hba-149l1
LE_HBa0149L01
P149L01
Clone type
BAC
Contamination
none
Estimated length
107,924
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found