Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0149J01_T7_89905

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0149J01_T7_89905
Primer
T7
ID from Seq. Facility
LE_HBa_149_J01-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
503 trimmed for vector and quality, 810 raw
Sequence
>LE_HBa0149J01_T7_89905 (raw untrimmed)
AAGCTGGTCCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGGTCATGGTGGTTTTGGAACCGTGTTCCTAGGGGAGCTATCAGATTCTTC
ACTTGTAGCTGTGAAGAGACTTGAAAGAGCTGGTGGCGGTGAAAAGGAATTTCGAGCTGAGGTATGCACAATAGGGAACATTCAGCATGTTAATTTAGTG
AGATTGAGGGGATTTTGCACTGAAAATTCTCATAGGCTTCTGGTTTATGAGTACATGTCAAAGGGTCCTCTTAGCGCATATTTAAGGAGAGATAGTCAGA
ATCTAAGTTGGGATGTTAGATTCCGAATTGCTGTAGGGACAGCAAGAGGTATCACTTATTTACACGAAGAGTGTCGCAATTGTATAATACATTGTGACAT
TAAACCAGAGAATATTCTGCTAGATGAAGATTTTTCAGCAAAGGTTTCTGATTTTGGACTTGCAAAGCTCCTTGGTAGGGACTTTACTAGAGTGTTGGCT
ACCATGAGGGGTACCTGGGGCTATGTTGCACCCGAGTGGATCTCTGGTTTAGCAATCCTTCCTAAGCTTGATGTATATTGCTACCGTTTGACATTCATCG
CACTCATTAGGTGGTCTTTGCTTACTTTTTCTTTTTATACTTTTATATAAGGTAAATTTTGTAGCTTTTTTTGGATTTTGGAGTTTTCTCTTCCCTCTTC
ACTTATCCTTCTCTTTTTAAGTTTATTCATCTTCTTGCTGATCACCTCTTTATGTTTTGTCTATGTTTTCTTCCCTTTTTCTTGTTCTTTTTTTTTCTAA
TTGTGTGATC
>LE_HBa0149J01_T7_89905 (trimmed for quality and cloning vector)
AGCTTGGTCATGGTGGTTTTGGAACCGTGTTCCTAGGGGAGCTATCAGATTCTTCACTTGTAGCTGTGAAGAGACTTGAAAGAGCTGGTGGCGGTGAAAA
GGAATTTCGAGCTGAGGTATGCACAATAGGGAACATTCAGCATGTTAATTTAGTGAGATTGAGGGGATTTTGCACTGAAAATTCTCATAGGCTTCTGGTT
TATGAGTACATGTCAAAGGGTCCTCTTAGCGCATATTTAAGGAGAGATAGTCAGAATCTAAGTTGGGATGTTAGATTCCGAATTGCTGTAGGGACAGCAA
GAGGTATCACTTATTTACACGAAGAGTGTCGCAATTGTATAATACATTGTGACATTAAACCAGAGAATATTCTGCTAGATGAAGATTTTTCAGCAAAGGT
TTCTGATTTTGGACTTGCAAAGCTCCTTGGTAGGGACTTTACTAGAGTGTTGGCTACCATGAGGGGTACCTGGGGCTATGTTGCACCCGAGTGGATCTCT
GGT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.958369
Expected error %
0.966814
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g19130.1 Score 235 E Value 1e-62 Identity 23.20% Align. Length 500bp (99.40%) Frame 1
68415.m02233 S-locus lectin protein kinase family protein contains Pfam domains PF00954: S-locus glycoprotein family, PF00069: Protein kinase domain and PF01453: Lectin (probable mannose binding)
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g32300.1 Score 216 E Value 7e-57 Identity 20.90% Align. Length 497bp (98.81%) Frame 1
68417.m04596 lectin protein kinase family protein contains Pfam domains, PF01453: Lectin (probable mannose binding) and PF00069: Protein kinase domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB80792.1| Score 275 E Value 4e-73 Identity 26.90% Align. Length 500bp (99.40%) Frame 1
AT4g00340 [Arabidopsis thaliana] gb|AAF02796.1| Similar to receptor-like protein kinase precusor; F5I10.19 [Arabidopsis thaliana] gb|AAB62838.1| Similar to receptor-like protein kinase precusor [Arabidopsis thaliana] pir||T01537 S-receptor kinase (EC 2.7.1.-) homolog 1 precursor - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAA32858.1| Score 275 E Value 4e-73 Identity 26.90% Align. Length 500bp (99.40%) Frame 1
receptor-like protein kinase
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0149J01
Clone
Clone name
hba-149j1
LE_HBa0149J01
P149J01
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found