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Clone Read LE_HBa0143B24_T7_88799

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0143B24_T7_88799
Primer
T7
ID from Seq. Facility
LE_HBa_143_B24-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
655 trimmed for vector and quality, 704 raw
Genbank Accession
DU077671
Sequence
>LE_HBa0143B24_T7_88799 (raw untrimmed)
CCCGGTACCCGGGGGGTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTATGAGAAGTATTGTGTTGATCCCTTTCCATTAGGAACAAATGCAATTGTGG
CAGTTTTGGCTCCTTCAGGGGAAGAGTTCTGTACGTGCCTTGTTTGATTTTTTATCAGCGGAAACATAAAATACATACCTTCATGTTATGCAGATATGAC
ATGGAAGACGCTATGGTCTTAAATAAATCATCTGTAGATCGTGGTATGTGTCATGGGCATATATACCAGGTATCATTTGACATTTTAAAAAGCTTTTTGG
ACTTCGGTTTTTTGATACAGAAACAACTTTTTTGTTCAACCCCCCACCCCCCAAGGGAATACAAATACATCTATCGGACTATGATATTTTCCTTTTTACA
CTACATTAATGGAGTTTTAAGTTATTGTACCAATGATTTGTCTACGATAAGTTTTCAGAAGGATGATTCTCATCAACTCAAACCTTCTTTGAGACCACAC
ACAACACCATGAACTTTGATGCTTGATGGTCTTTTTGTTTCTCTTCTTTAGTTGGAGGGTCGAAGAATGAAAACCAGATCTATCTCTGTTCTTTTTCCTA
TTTTAGGTGTTTAGATTCTTATATAATTGATCCCTCCCTTGCTAAACTTACTTATCCTACTTTTCTTTTGTGGAGGTAGTTTTCTGATCTTTCACGTTGA
AGTC
>LE_HBa0143B24_T7_88799 (trimmed for quality and cloning vector)
AGCTTATGAGAAGTATTGTGTTGATCCCTTTCCATTAGGAACAAATGCAATTGTGGCAGTTTTGGCTCCTTCAGGGGAAGAGTTCTGTACGTGCCTTGTT
TGATTTTTTATCAGCGGAAACATAAAATACATACCTTCATGTTATGCAGATATGACATGGAAGACGCTATGGTCTTAAATAAATCATCTGTAGATCGTGG
TATGTGTCATGGGCATATATACCAGGTATCATTTGACATTTTAAAAAGCTTTTTGGACTTCGGTTTTTTGATACAGAAACAACTTTTTTGTTCAACCCCC
CACCCCCCAAGGGAATACAAATACATCTATCGGACTATGATATTTTCCTTTTTACACTACATTAATGGAGTTTTAAGTTATTGTACCAATGATTTGTCTA
CGATAAGTTTTCAGAAGGATGATTCTCATCAACTCAAACCTTCTTTGAGACCACACACAACACCATGAACTTTGATGCTTGATGGTCTTTTTGTTTCTCT
TCTTTAGTTGGAGGGTCGAAGAATGAAAACCAGATCTATCTCTGTTCTTTTTCCTATTTTAGGTGTTTAGATTCTTATATAATTGATCCCTCCCTTGCTA
AACTTACTTATCCTACTTTTCTTTTGTGGAGGTAGTTTTCTGATCTTTCACGTTG

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.954459
Expected error %
0.49107
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g29940.1 Score 51 E Value 8e-11 Identity 84.00% Align. Length 220bp (33.59%) Frame 3
68414.m03658 DNA-directed RNA polymerase family protein similar to SP|P22138 DNA-directed RNA polymerase I 135 kDa polypeptide (EC 2.7.7.6) (RNA polymerase I subunit 2) {Saccharomyces cerevisiae}; contains Pfam profiles PF04563; RNA polymerase beta subunit, PF04560: RNA polymerase Rpb2 domain 7, PF04561: RNA polymerase Rpb2 domain 2, PF04565: RNA polymerase Rpb2 domain 3, PF00562: RNA polymerase Rpb2 domain 6
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0143B24
Clone
Clone name
hba-143b24
LE_HBa0143B24
P143B24
Clone type
BAC
Contamination
none
Estimated length
121,723
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found