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Clone Read LE_HBa0139N13_T7_88585

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0139N13_T7_88585
Primer
T7
ID from Seq. Facility
LE_HBa_139_N13-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
656 trimmed for vector and quality, 868 raw
Genbank Accession
DU076888
Sequence
>LE_HBa0139N13_T7_88585 (raw untrimmed)
CATGGGTACCGGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCTGATATTTTCCGGGGAGCCCTCCTCTCCATCTTCTCCCTTCAGTGCCAC
CAGCTCTAGTCCATCTTGACTTCTGCAGCTAGTTGACCACCTCTTCCCGTCCAACCTACTCAATGCCTCGAGATCAAGTTCTCCAAAGTTTGTGGAGAGC
TCATCATCACTATGTCCAGTTCCCATTGAGGATAATCCTTGTCCATCACCATTGGTTAGCAATGGAATGAGGCCTTGAGCACCATTCCTCGAACTGTGTC
TCCTCTTGGTGTAACCTAAAGATGATCCGCGGCGTCTTCTTTGATACATAGTTTGACTTCCACACAAAATGCTGCTTCCTTTCCTCCTCAAAGTATCAGA
AAAGGATGGTGAATAACAACTCCCACCCCCACCCCTATATTTTGGTGTTGACCTCCTGGACCAACAAGGAATCCCACATCCCTGTCGACCAGGCAAATCA
AGCTGATCATCCACCTCATCATCCCCATCATTGAGAGAAGCCGTTGTGGCATCCCATGACCCAACAGTACTTGGATTTCGAATAGCATATCTGTTGAAAG
AACTTGTAGACAATGCAGGGGTGCTATATGTATAAGACGAATCCTCCCTCCCACTATTTCTCAACTTATATGACCAATAAGCCCGATTCCTATTCTTAAG
CTTCGCAAGCAATGGGGAAACTGCCAAAAACCTCCTTATACCCCCAAAATTCAATATTCCCCAATATCATCAGATTGAATAATCAAACTCGGGAATTTAC
CCTCCTATACCAAACCCCCAGACTACCCTCCTAAAATCATACAAGTAAATTCGTTCACCTCAGCATAA
>LE_HBa0139N13_T7_88585 (trimmed for quality and cloning vector)
AGCTTCTGATATTTTCCGGGGAGCCCTCCTCTCCATCTTCTCCCTTCAGTGCCACCAGCTCTAGTCCATCTTGACTTCTGCAGCTAGTTGACCACCTCTT
CCCGTCCAACCTACTCAATGCCTCGAGATCAAGTTCTCCAAAGTTTGTGGAGAGCTCATCATCACTATGTCCAGTTCCCATTGAGGATAATCCTTGTCCA
TCACCATTGGTTAGCAATGGAATGAGGCCTTGAGCACCATTCCTCGAACTGTGTCTCCTCTTGGTGTAACCTAAAGATGATCCGCGGCGTCTTCTTTGAT
ACATAGTTTGACTTCCACACAAAATGCTGCTTCCTTTCCTCCTCAAAGTATCAGAAAAGGATGGTGAATAACAACTCCCACCCCCACCCCTATATTTTGG
TGTTGACCTCCTGGACCAACAAGGAATCCCACATCCCTGTCGACCAGGCAAATCAAGCTGATCATCCACCTCATCATCCCCATCATTGAGAGAAGCCGTT
GTGGCATCCCATGACCCAACAGTACTTGGATTTCGAATAGCATATCTGTTGAAAGAACTTGTAGACAATGCAGGGGTGCTATATGTATAAGACGAATCCT
CCCTCCCACTATTTCTCAACTTATATGACCAATAAGCCCGATTCCTATTCTTAAGC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.967754
Expected error %
0.511418
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g02480.1 Score 255 E Value 1e-68 Identity 21.40% Align. Length 653bp (99.54%) Frame 3
68415.m00187 DNA polymerase-related weak similarity to DNA polymerase III holoenzyme tau subunit [Thermus thermophilus] GI:2583049
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g14460.1 Score 200 E Value 6e-52 Identity 18.30% Align. Length 650bp (99.09%) Frame 3
68414.m01715 DNA polymerase-related weak similarity to DNA polymerase III holoenzyme tau subunit [Thermus thermophilus] GI:2583049
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
pir||T00615 Score 255 E Value 6e-67 Identity 21.40% Align. Length 653bp (99.54%) Frame 3
DNA polymerase III gamma chain homolog T8K22.22 - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAC18938.2| Score 255 E Value 6e-67 Identity 21.40% Align. Length 653bp (99.54%) Frame 3
similar to prokaryotic DNA polymerase III gamma subunit [Arabidopsis thaliana] ref|NP_565285.1| DNA polymerase-related [Arabidopsis thaliana] gb|AAF82285.1| STICHEL [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0139N13
Clone
Clone name
hba-139n13
LE_HBa0139N13
P139N13
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found