Clone Read LE_HBa0139B01_T7_87985

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0139B01_T7_87985
Primer
T7
ID from Seq. Facility
LE_HBa_139_B01-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1223 raw
Sequence
>LE_HBa0139B01_T7_87985 (raw untrimmed)
AGTTCACATTCTGCGGATCTGTGACATCAGGATGAGCGACTCGTCAACTANGCGTCACATACGTGAGGCCGTCTCCCTTCTTCTGTTCTACGTGGAGATA
GCACGTTCCGAGATACACCTCNTCGCTCTTGTGAGTGTTGTCACATCGCTCATGCAGCGCATACATCTCCTCATCATACAGTCCAAATCAGCNTCTGACA
GATAGTATGTGTGCGCGAGATGACTTTCTTCTGAGACGGTGAGATAGCTAGATNACTGTGTCATGTATATCACGGAGTATGTCAAAGCACCGCTCANGCA
TGGCACGGTGCTATGCGCACCGTCTCTATCGCGCGCANCGCGCGCTCTGCGTGAACAACTGCATGATCTAGTCATGCTNGTTATCAGATATGACGATATG
ACTTCATGCGTNACCCCACGTGTGCGATGTCTCGTCTCTATCTTATNTGTCGTTGAACCCTCTCTCGGAGGATTGGTTAGCAGCGAGAACGCGCACGTCG
CGTGTGATGTGACGTNGCCTCTGCCTCTNACGCTCCCTGTCGATCATAGCCGCATCTGTCAGNCACCAGTNCTCATGAGCACGACTGGCACGCTCTGCTC
TATCTATGACTCGACTATAGATGTGGTACTCTGCCGCCGTCANCATANGTAATTCCTGTGACAGTAGCTATGAAGTACTGCTAGTAGTTGTGTATCTCTG
AGACGTGTTGTGTGGATAGTCTCTACTGTTGCGCGACTGTACTGNACAAGCAGACCAGGGAATACGGAGACACGACTACACGAACTCTAATGCAAGAGTA
TTGACTATAATTANAGCTGTCATCAGCGCGCTGGAATGCCGTACATATGACCTTCTGCTATGTGACTNCTTATCATTGCACCATACTCACATATATAATA
CTAANCTCTGCTACGCTATCGTATTATCACTTACATCTTATAATCAGTATACTTCGGCGACTCTACCGNCATCATGTACTACCTCTCTACAGAGCTCTAT
ATTGCTGTGTTACACGCGTCTTGTTGTGTTATATAGCATATGTATCAGACAATCACGTGGTCATGACATTATAGTAGATGATCTAGGTTAGATCATGTAC
TGCACTCTACACGCTTATTAATAGCGTTACATTATAATATTCGTCATAATCGACTCTAAGACGTAATTGAACTTGTATGATACTGTGAAGAACTAATATC
GAAGTGCGAGGTGAAAGCGCGAN
>LE_HBa0139B01_T7_87985 (trimmed for quality and cloning vector)
CA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • High predicted error rate
  • Low complexity
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
8.23994
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0139B01
Clone
Clone name
hba-139b1
LE_HBa0139B01
P139B01
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found