Clone Read LE_HBa0120F21_SP6_87448

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0120F21_SP6_87448
Primer
SP6
ID from Seq. Facility
LE_HBa_120_F21-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
610 trimmed for vector and quality, 824 raw
Sequence
>LE_HBa0120F21_SP6_87448 (raw untrimmed)
TTTCTTTAATTATGAGCTCATCAGACTCCCAAGGTATGCAAAGGCAACTCCATGATCCAACACCATTATTATTGTTCTAGAAATACGATAGAGCATTCAA
CCAAATTAAGCTACAATTCCAAATTGCACAGAAGGACGAGGTCGCCCTAACGAAGCCAAATTACAATTTGCTCGTCTTCCATCGATAATTGGAGCAGGAT
CAGCACATGCCCTCCTTGTAGACTCAGGGTCCCGGAAAGTCACCTAAACCCTCCAAAAAAATACCATGCGGAAATTATGTCATTCAGTTATCCAAATTCA
TAGATGCAGGCTAAGTAAAAGACAGACAATATAAATTATTTAACTAGAAGGGACAGACAGTAGACAGTGCAAATAAGGGATGTTATATCACCTGGTTGTA
AAAAAAAAAAGGGAGATTAAGATGGAATTTGAAAAAGGAACCATTTTTTTATCCATAAAACGGAAAGAAAACAAAAGATAGTAAAAAGAAACTGCATCCT
TTTCAAATTGAGTAAACAAGTAGTACTATAATTCATTGAAGGACACTCACAAAGCCATAGCCTTTGGATCGGCCAGTATTTTTATCAGTGATGACAACAG
CCTCGAGGATTTCACCAAACTGCTCAAAGAATCGTCTGAGGGTGTCACTCTGAGTTTCCCAAGCAAGACCTCCAACAAAGAACCCTTAGTGAAGGTGGTG
TCCCCAAAAGGAAAAATTAAAGAATGGAACCTCACTTGCCAGCACAAGAGGAACCCTGAACCCTTGAGCTGGGGGGTTGCTTGTTTGATACCCCCATAAT
CCACCTATCCAAATTTTGTTTTTA
>LE_HBa0120F21_SP6_87448 (trimmed for quality and cloning vector)
CAGACTCCCAAGGTATGCAAAGGCAACTCCATGATCCAACACCATTATTATTGTTCTAGAAATACGATAGAGCATTCAACCAAATTAAGCTACAATTCCA
AATTGCACAGAAGGACGAGGTCGCCCTAACGAAGCCAAATTACAATTTGCTCGTCTTCCATCGATAATTGGAGCAGGATCAGCACATGCCCTCCTTGTAG
ACTCAGGGTCCCGGAAAGTCACCTAAACCCTCCAAAAAAATACCATGCGGAAATTATGTCATTCAGTTATCCAAATTCATAGATGCAGGCTAAGTAAAAG
ACAGACAATATAAATTATTTAACTAGAAGGGACAGACAGTAGACAGTGCAAATAAGGGATGTTATATCACCTGGTTGTAAAAAAAAAAAGGGAGATTAAG
ATGGAATTTGAAAAAGGAACCATTTTTTTATCCATAAAACGGAAAGAAAACAAAAGATAGTAAAAAGAAACTGCATCCTTTTCAAATTGAGTAAACAAGT
AGTACTATAATTCATTGAAGGACACTCACAAAGCCATAGCCTTTGGATCGGCCAGTATTTTTATCAGTGATGACAACAGCCTCGAGGATTTCACCAAACT
GCTCAAAGAA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.946538
Expected error %
0.247993
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g76460.1 Score 80 E Value 1e-15 Identity 25.80% Align. Length 131bp (21.48%) Frame 2
68414.m08893 RNA recognition motif (RRM)-containing protein low similarity to RRM-containing protein SEB-4 [Xenopus laevis] GI:8895698; contains Pfam profile: PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g20880.1 Score 77 E Value 6e-15 Identity 25.00% Align. Length 131bp (21.48%) Frame 2
68414.m02615 RNA recognition motif (RRM)-containing protein similar to RRM-containing protein SEB-4 [Xenopus laevis] GI:8895698; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM); is the location of EST 197B1T7 , gb|AA597386
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAG51948.1| Score 80 E Value 5e-14 Identity 25.80% Align. Length 131bp (21.48%) Frame 2
putative RNA-binding protein; 24808-23340 [Arabidopsis thaliana] pir||D96792 probable RNA-binding protein, 24808-23340 [imported] - Arabidopsis thaliana gb|AAF16655.1| putative RNA-binding protein; 16955-18423 [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_565132.2| Score 80 E Value 5e-14 Identity 25.80% Align. Length 131bp (21.48%) Frame 2
RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0120F21
Clone
Clone name
hba-120f21
LE_HBa0120F21
P120F21
Clone type
BAC
Contamination
none
Estimated length
113,714
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found