Clone Read LE_HBa0120B04_T7_87223

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0120B04_T7_87223
Primer
T7
ID from Seq. Facility
LE_HBa_120_B04-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
456 trimmed for vector and quality, 827 raw
Sequence
>LE_HBa0120B04_T7_87223 (raw untrimmed)
CTCGGGTCCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTTAGCGGCTCAAAGTAGACAAAAAGAGTATGCAGATCGAAAGGTTAGGGAC
TTGGAGTTAATGGAGGGTGAGCAAGTCTTACTGAAGGTTTCGCCCATGAAAGGAGTGATGCGGTTTGTTAAGCGAGGTAAGCTAAGCCCAAGGTATATTG
GTCCATTTGAAGTTCTGAAGCGCGTGGGGGAGGTAGCTTATGAATTAGCCTTGCCCCCAGGACTGTCCGGAGTGCACCCAGTATTTTATGTTTCTATGTT
GAAAAGATACCATGGGGATGGAAACTACATCATTCATTGGGATTTAGTTCTGCTTGATGAGAATCTCTCCTATGAGGAGGAGCCTGTTGCTATTTTAGAT
AGAGAAGTCCGCAAGTTGAGGTCAAGGGAGATTGCATCCATCAAGGTTCAATGGAAGAATCGACCGGTTGAAGAATCCACTGGTGAGAAGGAGGCTGATA
TGCTAGAAATATACCCACACCTGTGTATATATTCTGGTACACCTTTTCGCCCTTGTTTTTCTACTTTGTTATCGCTAGTGGACTAATGTTTGGTTAATTT
TTTCTTTTTGTTATTTACCATTTTAATTTTATTATTTCTAGTGTATCATTTTTCTTTTTATTTCTGTTTTTGATCCTTTAGATGCTGATCTTTGATTTTT
CTTTTTTATTCATCAATTTATTGTATTTTTACCTTCTTTCTTGATTTTTTTTTTTTACCTTCTTTAAGTTGTTTTTTTATGTCTTTTTCTTATTTTCATT
AATTGCGTATTGTTCTTGTGTTTGTAG
>LE_HBa0120B04_T7_87223 (trimmed for quality and cloning vector)
AGCTTTTAGCGGCTCAAAGTAGACAAAAAGAGTATGCAGATCGAAAGGTTAGGGACTTGGAGTTAATGGAGGGTGAGCAAGTCTTACTGAAGGTTTCGCC
CATGAAAGGAGTGATGCGGTTTGTTAAGCGAGGTAAGCTAAGCCCAAGGTATATTGGTCCATTTGAAGTTCTGAAGCGCGTGGGGGAGGTAGCTTATGAA
TTAGCCTTGCCCCCAGGACTGTCCGGAGTGCACCCAGTATTTTATGTTTCTATGTTGAAAAGATACCATGGGGATGGAAACTACATCATTCATTGGGATT
TAGTTCTGCTTGATGAGAATCTCTCCTATGAGGAGGAGCCTGTTGCTATTTTAGATAGAGAAGTCCGCAAGTTGAGGTCAAGGGAGATTGCATCCATCAA
GGTTCAATGGAAGAATCGACCGGTTGAAGAATCCACTGGTGAGAAGGAGGCTGATA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.961879
Expected error %
0.483984
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 189 E Value 2e-47 Identity 20.30% Align. Length 452bp (99.12%) Frame 1
putative polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39954.1| Score 184 E Value 9e-46 Identity 19.40% Align. Length 452bp (99.12%) Frame 1
putative integrase [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0120B04
Clone
Clone name
hba-120b4
LE_HBa0120B04
P120B04
Clone type
BAC
Contamination
none
Estimated length
123,813
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found