Clone Read LE_HBa0102F18_SP6_86674

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0102F18_SP6_86674
Primer
SP6
ID from Seq. Facility
LE_HBa_102_F18-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
565 trimmed for vector and quality, 753 raw
Genbank Accession
DU077201
Sequence
>LE_HBa0102F18_SP6_86674 (raw untrimmed)
GGTTTTTAATTTTTGACTTTTTTGGGATGAAATGTACTCTGTCTTTAGGTATTGATGGAAATGGAGGAGTTAATGAATATCATCATCATCATCATCATCT
TCCTAGTTTACAGAGTTCACTTTCTGGTGAAATGACAAATTTGGCAGGGGATGCTTGTTTGGTTTTAACGGCAGATCATAGGCCTAGACTCCGGTGGACG
GCGGAGCTACATGAAAGATTTGTGGATGCTGTTTCTCAACTCGGTGGCCCAGATAGTACGTTATTCGTTTCAATTTATATGACACTTTTTTCGCTTTTTA
GTACCTTTAATGAGATTGATTTATAGTCTTACAAATGTTTGTAGCTTGTGACTATCTTTTAGGGTCTATTGGAAACGACTATAAGGTAGTGGTAAAGTCT
GCGTACACTATACCCTCTACACACGCTACTTTATTGGATTAGACTGTTTTTGTTGTTGTTGTTGTTGTACTAGTTTTGGTAGGATTATTTTCCATAGTGG
AAAGTACTTTCTAGGAAAATAATGTTGTTTGGTTAGTGAGTGAAAAACAATTTTTAAAATTTTCGGAAATTGGGAGTAGGGGAAGGGGAAGGGGAAGGGG
AATTTCGAGTTATATTGCTGGGTTGAAACTTCTACTCTTTACAGTGAGACTATATGTTGATATACCAACAGTCCAACCCCTGATTGAGTTCTCACAACTA
TATTACATCTTGTTTTTTGTGTTTTTTTTCTTTCATGTCTTTTTTTTCCTTTT
>LE_HBa0102F18_SP6_86674 (trimmed for quality and cloning vector)
TGAAATGTACTCTGTCTTTAGGTATTGATGGAAATGGAGGAGTTAATGAATATCATCATCATCATCATCATCTTCCTAGTTTACAGAGTTCACTTTCTGG
TGAAATGACAAATTTGGCAGGGGATGCTTGTTTGGTTTTAACGGCAGATCATAGGCCTAGACTCCGGTGGACGGCGGAGCTACATGAAAGATTTGTGGAT
GCTGTTTCTCAACTCGGTGGCCCAGATAGTACGTTATTCGTTTCAATTTATATGACACTTTTTTCGCTTTTTAGTACCTTTAATGAGATTGATTTATAGT
CTTACAAATGTTTGTAGCTTGTGACTATCTTTTAGGGTCTATTGGAAACGACTATAAGGTAGTGGTAAAGTCTGCGTACACTATACCCTCTACACACGCT
ACTTTATTGGATTAGACTGTTTTTGTTGTTGTTGTTGTTGTACTAGTTTTGGTAGGATTATTTTCCATAGTGGAAAGTACTTTCTAGGAAAATAATGTTG
TTTGGTTAGTGAGTGAAAAACAATTTTTAAAATTTTCGGAAATTGGGAGTAGGGGAAGGGGAAGG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.953839
Expected error %
0.110912
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g24120.2 Score 77 E Value 6e-15 Identity 23.50% Align. Length 152bp (26.90%) Frame 1
68416.m03029 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g24120.1 Score 77 E Value 6e-15 Identity 23.50% Align. Length 152bp (26.90%) Frame 1
68416.m03028 myb family transcription factor contains Pfam profile: PF00249 myb-like DNA-binding domain
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAB01353.1| Score 80 E Value 2e-14 Identity 23.50% Align. Length 161bp (28.50%) Frame 1
unnamed protein product [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM65964.1| Score 77 E Value 3e-13 Identity 23.50% Align. Length 152bp (26.90%) Frame 1
transfactor, putative [Arabidopsis thaliana] gb|AAM16202.1| AT3g24120/MUJ8_3 [Arabidopsis thaliana] gb|AAK91372.1| AT3g24120/MUJ8_3 [Arabidopsis thaliana] ref|NP_566744.1| myb family transcription factor [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0102F18
Clone
Clone name
hba-102f18
LE_HBa0102F18
P102F18
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found