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Clone Read LE_HBa0093P14_SP6_86378

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0093P14_SP6_86378
Primer
SP6
ID from Seq. Facility
LE_HBa_093_P14-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
636 trimmed for vector and quality, 909 raw
Sequence
>LE_HBa0093P14_SP6_86378 (raw untrimmed)
CGGCAATATTCTTCTTTTTTGTTTGCCTATAACACAGCTCTCGCAAAGACCCATATCAACAGACTTCAGACCCTCTCCTTCTCCTTTTGCAACCAGCATC
TTCATTCCTTTAGTACTCCTGTGTCCAAGTCTGTTGTGCCACAAACATGAACCGGAAGCACCTTCAGCAACAGCGGCCATGTTTATACACCCTGCAGTGG
TGTACAACGTTCCAGATTTGGTGCCACGAGCCACTACCATAGCACCTTTCACGATCTTCCACGAACCTTTTCCAAACTCTGCTGCATATCCCGTGCTATC
CAACTGACCAACAGAGATCAGATTTTTCTTGATCCCAGGAATATATATGACATCCTCCAATGTCCACTGGTTTCCCGAGGTGGTCTTTATGCAAACATCC
CCCTTTCATTCAATCTTTAAGGCTTTATTGTCAGCAAGATATACTTTTCCAAAATTTTCAAATTTGAAGTTTTGGAACAACTCCTTGCTTGGAGACGAAT
GGAAAGATGCACCAGAATCCAAAATCCATGATTCAACCGGGTTGTTCACACTAAGGATTAGAGCATCCCCAATGTCTTCTGCTGAATTTACAAAATCATT
GTCATCCTCCAAATTTATGATTCTGTTTCTTCTTTGGCTTTTGTACCAGATCGTAATGAAAGTGCCCTTTTTCTCCACAGTTCCAACAAGTCACGTTTTG
ATCTGTTAAGTGATTTTCCTCAATTCTTTGATTTTGAATCGACAAGGTGGATTTTGGCCTTTTCTCCTTACTTCTCCCCCTTCAATCAACGCTAAGAACA
CTGCCCGATTAATCCCCCACTTTCCATTTGCAAAACTTTCGCTAACACGGATTTCCCCAACCTTCATTTCCCCGATCCCAGGAAAGGCTAATGGAGCCAA
AAGATGTTC
>LE_HBa0093P14_SP6_86378 (trimmed for quality and cloning vector)
ACAGCTCTCGCAAAGACCCATATCAACAGACTTCAGACCCTCTCCTTCTCCTTTTGCAACCAGCATCTTCATTCCTTTAGTACTCCTGTGTCCAAGTCTG
TTGTGCCACAAACATGAACCGGAAGCACCTTCAGCAACAGCGGCCATGTTTATACACCCTGCAGTGGTGTACAACGTTCCAGATTTGGTGCCACGAGCCA
CTACCATAGCACCTTTCACGATCTTCCACGAACCTTTTCCAAACTCTGCTGCATATCCCGTGCTATCCAACTGACCAACAGAGATCAGATTTTTCTTGAT
CCCAGGAATATATATGACATCCTCCAATGTCCACTGGTTTCCCGAGGTGGTCTTTATGCAAACATCCCCCTTTCATTCAATCTTTAAGGCTTTATTGTCA
GCAAGATATACTTTTCCAAAATTTTCAAATTTGAAGTTTTGGAACAACTCCTTGCTTGGAGACGAATGGAAAGATGCACCAGAATCCAAAATCCATGATT
CAACCGGGTTGTTCACACTAAGGATTAGAGCATCCCCAATGTCTTCTGCTGAATTTACAAAATCATTGTCATCCTCCAAATTTATGATTCTGTTTCTTCT
TTGGCTTTTGTACCAGATCGTAATGAAAGTGCCCTT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.971248
Expected error %
0.580633
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
pir||T02206 Score 147 E Value 3e-34 Identity 12.60% Align. Length 608bp (95.60%) Frame 2
hypothetical protein - common tobacco retrotransposon Tto1 dbj|BAA11674.1| ORF(AA 1-1338) [Nicotiana tabacum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAV88069.1| Score 138 E Value 1e-31 Identity 12.90% Align. Length 533bp (83.81%) Frame 2
hypothetical retrotransposon [Ipomoea batatas]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0093P14
Clone
Clone name
hba-93p14
LE_HBa0093P14
P093P14
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found