Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0040J09_T7_8513

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0040J09_T7_8513
Primer
T7
ID from Seq. Facility
LE_HBa_040_J09-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
740 trimmed for vector and quality, 980 raw
Genbank Accession
DU027715
Sequence
>LE_HBa0040J09_T7_8513 (raw untrimmed)
TGTAAATTGGTACCGCGGGGATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTAAACTCTTTCCATGGTGAAATAAATTTGACAATGCCACAAACAAAAA
GTGAATTCTAGTGCCCATAAATTTTAAGCTTATTGGGGGAAAAGCTTCACTATCCTATCAATAGTGTGCTTAATACAGAAGGTTTGACCAGAACACTAGG
AGGCAAGGTTGAGGAGCTTCCAACTGCTTACCTAGGTATGCCTTTGGGAGCTAAAAAAGCAAGTCCAAAGGCATATGGAATGGGGTACTGGAGAAATGTG
AAAAGAGACTCACTAGCTAGAAGAGTTTGTACTTGTCCTTGGGAGGAAGATTGACTTTAATTAACAGTGTGATGGATGCATTACCCTCTTATATGATGTC
AGTCTTCCCTATGCCTGCCAGTGTATCTAATAGCATTGATGCTCTTAGAAGAAATTTCTTATGGCAAGGCAGTGAAGATAAGAAGAAGTTTCATCTTGTT
AAATGGAAAGAACTGATGGTGAGTAAAAACACAGGAGGCCTAGGTATAAGAAATCTGAGGAAACAAAACCAGAGCCTAATGATGAAGTGGTTGTGGAAGT
TGGCAAATGAAGATAACATGCTCTGGTAAGAGGTCATCATAGCAAAATATGGCATGGAAGATAAGCGGATGACTAANATGATAAGTACTCCATAAAATGC
ACCGTATGGAGGGGAATCAGAAATCTATGGCCAGTGCTATATCACAGAACCAAGGTAGAAGTGGGAAATGGGTAAAACCATCCTTCTGGGAAGATAAGGG
AAATGGGTCCTGTCCTAAGAAACTGTCTTATCCTTATGTGTCCTTTAGTCCATCATAACAGGCCTTTGCGCTATCATTGGAACAGAAAAAGAGGAATCTT
TCCCCGCGAAGACCCCACCAATAGAAATCTCACAAGGGCTGCCGCTCATCGCCTTATCTCCCGTTCCTGGTAGCGAGAGT
>LE_HBa0040J09_T7_8513 (trimmed for quality and cloning vector)
AGCTTAAACTCTTTCCATGGTGAAATAAATTTGACAATGCCACAAACAAAAAGTGAATTCTAGTGCCCATAAATTTTAAGCTTATTGGGGGAAAAGCTTC
ACTATCCTATCAATAGTGTGCTTAATACAGAAGGTTTGACCAGAACACTAGGAGGCAAGGTTGAGGAGCTTCCAACTGCTTACCTAGGTATGCCTTTGGG
AGCTAAAAAAGCAAGTCCAAAGGCATATGGAATGGGGTACTGGAGAAATGTGAAAAGAGACTCACTAGCTAGAAGAGTTTGTACTTGTCCTTGGGAGGAA
GATTGACTTTAATTAACAGTGTGATGGATGCATTACCCTCTTATATGATGTCAGTCTTCCCTATGCCTGCCAGTGTATCTAATAGCATTGATGCTCTTAG
AAGAAATTTCTTATGGCAAGGCAGTGAAGATAAGAAGAAGTTTCATCTTGTTAAATGGAAAGAACTGATGGTGAGTAAAAACACAGGAGGCCTAGGTATA
AGAAATCTGAGGAAACAAAACCAGAGCCTAATGATGAAGTGGTTGTGGAAGTTGGCAAATGAAGATAACATGCTCTGGTAAGAGGTCATCATAGCAAAAT
ATGGCATGGAAGATAAGCGGATGACTAANATGATAAGTACTCCATAAAATGCACCGTATGGAGGGGAATCAGAAATCTATGGCCAGTGCTATATCACAGA
ACCAAGGTAGAAGTGGGAAATGGGTAAAACCATCCTTCTG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.958285
Expected error %
0.850652
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g36905.1 Score 108 E Value 3e-24 Identity 11.80% Align. Length 518bp (70.00%) Frame 1
68418.m04423 RNase H domain-containing protein low similarity to reverse transcriptase [Arabidopsis thaliana] GI:976278; contains Pfam profile PF00075: RNase H
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g24255.1 Score 76 E Value 4e-16 Identity 34.80% Align. Length 382bp (51.62%) Frame 2
68416.m03045 expressed protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89733.1| Score 120 E Value 7e-29 Identity 48.30% Align. Length 430bp (58.11%) Frame 1
hypothetical protein [Solanum tuberosum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAP53939.1| Score 118 E Value 1e-25 Identity 14.40% Align. Length 416bp (56.22%) Frame 1
putative non-LTR retroelement reverse transcriptase [Oryza sativa (japonica cultivar-group)] ref|NP_921652.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa (japonica cultivar-group)]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0040J09
Clone
Clone name
hba-40j9
LE_HBa0040J09
C08HBa0040J09
P040J09
Clone type
BAC
Contamination
none
Estimated length
82,363
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found