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Clone Read LE_HBa0072N16_SP6_84750

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0072N16_SP6_84750
Primer
SP6
ID from Seq. Facility
LE_HBa_072_N16-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
625 trimmed for vector and quality, 928 raw
Sequence
>LE_HBa0072N16_SP6_84750 (raw untrimmed)
GGGCCTAGGGTTTATTGATCAAAAGATATGGGAAAAACGGATGTCGGTATTGCATCTAATTTTGAACATCTAAGTTGTATGACATTATCATCCCATTATA
GCATATCCAATTACACTGAAATCAGATACACTATCAATTTTGAGACTTAGAGCAGGTAACACTCATTGATATCAGTTTCTGACATTAAATATGAACTTAA
CCCACAAAATTGGTATTAGATCTCAATCGAAGAGGATGATAAATTTACACAGACAAGTCCTATCACTTTATTTCAGAGACGAGAGGGGACAGAAAGCAGA
GGTTGTACAGTCGTCTATATGAGGAAACACAAAAAGGATCAGTGTTCATACATTACAGCAGGCTCCCATCAATGAGCTATATGATATCGATCCCAAATTT
ATGCCTTTAGCCCTTGCTTCTTCTAGAACTTCAAATGCAGCTTCCAACTTACCTGTGTGCCCTGCCACATCTATCAGCGCACTGATAAACATCTGCACGA
ATAAAGGAAACTTAAGTTTTTTTTTCTAATTTAATTATTTATCAAAAAATATGACGGAAGTAAGAAATATCAGTGGCGAAGTTTTAACTTAATGCTGACA
ATTGATGAAAAGATGGAGACAGATACTGATGCATTTAAGCTCCGATTTCAGAAACAAGGTTGAGAGGCATGATTTTGGAGATAGAGGCCGACAAATTCTG
TATTTCAGGAAAACTGACTCATCTAATCAATCAAAACAAATAAACTTCACTTATGCCCCGCTAGACCGACTACTCCAAAAAGCCTCCACCTTAAACCCAA
TTACTTGGAACAACAAACAACAAAAAAAAAAAAAGTAACCAAACTTTTTTGGGGCCCGCAAACCAAAAATAAAACCAGAAATTTTTTGGTAATATTGCCC
CAAGGACGCCCTCTTTTTTTTGAGAAAT
>LE_HBa0072N16_SP6_84750 (trimmed for quality and cloning vector)
AAAAACGGATGTCGGTATTGCATCTAATTTTGAACATCTAAGTTGTATGACATTATCATCCCATTATAGCATATCCAATTACACTGAAATCAGATACACT
ATCAATTTTGAGACTTAGAGCAGGTAACACTCATTGATATCAGTTTCTGACATTAAATATGAACTTAACCCACAAAATTGGTATTAGATCTCAATCGAAG
AGGATGATAAATTTACACAGACAAGTCCTATCACTTTATTTCAGAGACGAGAGGGGACAGAAAGCAGAGGTTGTACAGTCGTCTATATGAGGAAACACAA
AAAGGATCAGTGTTCATACATTACAGCAGGCTCCCATCAATGAGCTATATGATATCGATCCCAAATTTATGCCTTTAGCCCTTGCTTCTTCTAGAACTTC
AAATGCAGCTTCCAACTTACCTGTGTGCCCTGCCACATCTATCAGCGCACTGATAAACATCTGCACGAATAAAGGAAACTTAAGTTTTTTTTTCTAATTT
AATTATTTATCAAAAAATATGACGGAAGTAAGAAATATCAGTGGCGAAGTTTTAACTTAATGCTGACAATTGATGAAAAGATGGAGACAGATACTGATGC
ATTTAAGCTCCGATTTCAGAAACAA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.949479
Expected error %
0.142217
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g34830.1 Score 70 E Value 1e-12 Identity 21.50% Align. Length 143bp (22.88%) Frame 3
68417.m04942 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAP52447.1| Score 74 E Value 3e-12 Identity 21.50% Align. Length 143bp (22.88%) Frame 3
putative crp1 protein [Oryza sativa (japonica cultivar-group)] ref|NP_920160.1| putative crp1 protein [Oryza sativa (japonica cultivar-group)] gb|AAL76193.1| Putative crp1 protein [Oryza sativa]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB80200.1| Score 70 E Value 5e-11 Identity 21.50% Align. Length 143bp (22.88%) Frame 3
putative protein [Arabidopsis thaliana] emb|CAB45444.1| putative protein [Arabidopsis thaliana] ref|NP_195209.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] pir||T10229 hypothetical protein T11I11.70 - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0072N16
Clone
Clone name
hba-72n16
LE_HBa0072N16
P072N16
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found