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Clone Read LE_HBa0072L21_SP6_84664

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0072L21_SP6_84664
Primer
SP6
ID from Seq. Facility
LE_HBa_072_L21-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
409 trimmed for vector and quality, 890 raw
Sequence
>LE_HBa0072L21_SP6_84664 (raw untrimmed)
CCTTTTTTGAAGTCCTTCGACCTTTCCTTCCTATATAGTCAGTTCCCGTAGTGAATGACTTTCTGAGAGTCTTTCCCGATGACTTGCCCAAAATTCCTCC
CGAGCGGGAAATAGACTTTGGTATTGACTTGTTACCGGATGTGAATCCCATTTGAATCCCTCCTTATTGGATGGCTCCGACGGAGTTAAAAAAATTTAAA
GCTCTAACTCCAAAGTTTATTAGAAAAGGGTTTCATTCAACCTTGTATTTCACCATAGGGATATATATTGTTGTTTGTTAATAATAAGGATGGGTACCTT
AGTATGTTTATTGGCTATCGTCAACTCAATCAGGTCACTATTAATAACAAGTATCCTCTCCCTTGGATTGACGACTGGTTTGATCAACTCTAAGGTGCAA
GGTACTTTTCTAAGATTGACTTGAGATAAGGGTATCACAAAATTATGATGATCGGTGAGGATGTACCTAAAAATGTATTTTGAACTAAGTAAGGTCACTA
CGAGTTTTTAGTAATGTCTTTAGGTGTCACAAATGCCCCGATGGCATTTATTAGTCCTTAATGATTACGTAGATTGGCACATACATATATTCCATTTTCA
ATTCCTTTCTCCATCATTGTCTTCCTACTTTGTATGTATATCCTTTATCTAATAACCATATTATTCTAGCCAAACAATCACCTATAAACTGCCTCCTGTC
TAAAAGGGAAGACACTTAACAACTATTCACTCTATTGCTTCCTCTCCTTCCCATTTACTATTGTGCACGACTTATAAACATGTTTCCTAACGCCTGAGAT
TCCTGCACCTCTATCTGCAATACCACACGTTTTTCCTATTCGCGGCGTCCATGTGCCTTTATTATACTCTCCCCACTCCTCACTTATTTT
>LE_HBa0072L21_SP6_84664 (trimmed for quality and cloning vector)
AATGACTTTCTGAGAGTCTTTCCCGATGACTTGCCCAAAATTCCTCCCGAGCGGGAAATAGACTTTGGTATTGACTTGTTACCGGATGTGAATCCCATTT
GAATCCCTCCTTATTGGATGGCTCCGACGGAGTTAAAAAAATTTAAAGCTCTAACTCCAAAGTTTATTAGAAAAGGGTTTCATTCAACCTTGTATTTCAC
CATAGGGATATATATTGTTGTTTGTTAATAATAAGGATGGGTACCTTAGTATGTTTATTGGCTATCGTCAACTCAATCAGGTCACTATTAATAACAAGTA
TCCTCTCCCTTGGATTGACGACTGGTTTGATCAACTCTAAGGTGCAAGGTACTTTTCTAAGATTGACTTGAGATAAGGGTATCACAAAATTATGATGATC
GGTGAGGAT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.962838
Expected error %
0.398536
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 100 E Value 3e-38 Identity 65.00% Align. Length 405bp (99.02%) Frame 2
putative gag-pol polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 99 E Value 2e-38 Identity 63.70% Align. Length 405bp (99.02%) Frame 2
putative retrotransposon protein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0072L21
Clone
Clone name
hba-72l21
LE_HBa0072L21
P072L21
Clone type
BAC
Contamination
none
Estimated length
57,840
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found