Clone Read LE_HBa0060P18_T7_83315

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0060P18_T7_83315
Primer
T7
ID from Seq. Facility
LE_HBa_060_P18-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
732 trimmed for vector and quality, 885 raw
Sequence
>LE_HBa0060P18_T7_83315 (raw untrimmed)
CTCACTTGGGTCCCGAGGGGATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTAGTGGGTATGAAATCTCAGGCTGTTAAAGTAACCTCATTATTAGATA
TGGAATCAAATGATGTTCGTTCTATTGGTATTTGGGGTATGGGCGGCATCGCCAAAACAGAAATTGCAACTGTTCTACATCAATTTGAAGCTGATTGTTT
TCTCGGTGATGTTGGAAAACTTCATCAGAAAAATGGACTAACATGGCTAGAAACAAGTCGTCATTTGCAAGCTCTTGGGTGAAAAATTGACTCTTAACTA
GTGAGGATGAAGGGATGAATATTTTAAAGAATATGCTTCGTTGGAAGAAAGTTCTGTTCACCATCGATGACGTAAACCATCAAGAACAGTTGGAATTTTG
GGTTGGAGAACCAGAATGGTATGAAAAGGAAGACATGAGTGATGCAAACGTCTGTCTATCACTTATTTTACGTCACAAATTTCAAATTATATTTTGCTTT
CTTTCTTAAATTTCGTACTCAAACCAAACACGTATCGTAAAATGGTATGGAAAGAGTATGTGCTACATTGTTAGTACAATTTGTATATGAGGGGTTTGTA
TCAATGATACATGGATGAAATTTTTACTAATTATAAGGCTTAAGTCATCTACGGCCACTTAAAGTTGTCCATATATTTCACTTAAACACCTTAACATGTC
CATTTTCCTATTAGACACTTCAACCTTACAAAATAAATACCTATCAAATATTTTTTCTGACACGTACTTAAAAAATGAAGTGCGTGCAACACACACGCAG
TTGATGTGGCAAAATAACAAATTAAATTACCACATGTGGCATTTTAGTTTAATTATCTCCCCAACTTTATATTTTTTTTTTTTTT
>LE_HBa0060P18_T7_83315 (trimmed for quality and cloning vector)
CTAGAGTCGACCTGCAGGCATGCAAGCTTAGTGGGTATGAAATCTCAGGCTGTTAAAGTAACCTCATTATTAGATATGGAATCAAATGATGTTCGTTCTA
TTGGTATTTGGGGTATGGGCGGCATCGCCAAAACAGAAATTGCAACTGTTCTACATCAATTTGAAGCTGATTGTTTTCTCGGTGATGTTGGAAAACTTCA
TCAGAAAAATGGACTAACATGGCTAGAAACAAGTCGTCATTTGCAAGCTCTTGGGTGAAAAATTGACTCTTAACTAGTGAGGATGAAGGGATGAATATTT
TAAAGAATATGCTTCGTTGGAAGAAAGTTCTGTTCACCATCGATGACGTAAACCATCAAGAACAGTTGGAATTTTGGGTTGGAGAACCAGAATGGTATGA
AAAGGAAGACATGAGTGATGCAAACGTCTGTCTATCACTTATTTTACGTCACAAATTTCAAATTATATTTTGCTTTCTTTCTTAAATTTCGTACTCAAAC
CAAACACGTATCGTAAAATGGTATGGAAAGAGTATGTGCTACATTGTTAGTACAATTTGTATATGAGGGGTTTGTATCAATGATACATGGATGAAATTTT
TACTAATTATAAGGCTTAAGTCATCTACGGCCACTTAAAGTTGTCCATATATTTCACTTAAACACCTTAACATGTCCATTTTCCTATTAGACACTTCAAC
CTTACAAAATAAATACCTATCAAATATTTTTT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.956571
Expected error %
0.203172
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g17680.1 Score 54 E Value 1e-11 Identity 40.30% Align. Length 370bp (50.55%) Frame 2
68418.m02072 disease resistance protein (TIR-NBS-LRR class), putative domain signature TIR-NBS-LRR exists, suggestive of a disease resistance protein.
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAR21295.1| Score 66 E Value 5e-14 Identity 50.70% Align. Length 370bp (50.55%) Frame 2
bacterial spot disease resistance protein 4 [Lycopersicon esculentum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAD56833.1| Score 62 E Value 4e-14 Identity 47.80% Align. Length 373bp (50.96%) Frame 2
putative resistance gene analogue protein [Lens culinaris]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0060P18
Clone
Clone name
hba-60p18
LE_HBa0060P18
P060P18
Clone type
BAC
Contamination
none
Estimated length
101,568
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found