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Clone Read LE_HBa0060J03_SP6_82996

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0060J03_SP6_82996
Primer
SP6
ID from Seq. Facility
LE_HBa_060_J03-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1291 raw
Sequence
>LE_HBa0060J03_SP6_82996 (raw untrimmed)
ATACTAATTTACAGATTCACTTGTCTATCTCCGCTCTTAGTCACACAGATCTCGTAGCCAGATCCTCGGCTGTATACCCGTGTATTCGCTACTATTCCCT
TAGGCTCTTACACTCTNCGCGTGGTTCGACGCNACTGCTCCCTTCTTGTTATAGTTTCTCTCTCACTCTTCACCNTNTCTCNTCATTGTTAACGTCCAGC
GTGAGAGTGAACACTCTTCTGAACTCACTATGTGTCGTCATGNGCTAACATAACGTGGAATCTCAAGTGAACGGTAGAGTACGTCCTTTTACTTATACAG
AGTGCGACGCCTGAACTGTCAATGCTAAACGCACATGACGAGACTCTATTAGCGTCTAGAACCTTACGACAATCGTCCATCACGATCCAATACTCAGCAC
CTCTCATGCGTGCTATGAGTNTACCACTACGCNCAAGCACAACCTACTACTGCGCTCCGTGCCTTAGCAGATATTCAAACATGACACAAACAGCACTGCC
GCCACATCTATTATAGTAGATTGACTACAGGATAGAGCGGATATCGCACCTATCTGTGTGCAATAAATGTATAACTCTCCACTCCTAATCCTCCCTAATG
TATTGGGGTGCTGTACGATCTGTAAATCGATGTGGACATATTTATNTACACCATCGAATCCTTTCTGTATGCGTTGATAGGGATCTGTGTGCTTATGACT
AGATCCTAGATATGNGNTGGAGTGAATTACGCGTCAGTAAAGACTCATAACGCCGTCAAGTAAATGCCGTGGGAGAATGGACTAAGCCACGGTCGGCTCT
TTTGTGTTTGGTAGTGCGCGCGTATAGATTCGAGACAGTCACAGCCGTTTTATAGGGAGCACAACAAATACAAAAGTGCGGCGTCGCGTGTCAGGCGATG
CAGTTGACTCAATGAGAACTGTGCCTTTNCACGCTCTCCCTGCCGCCCGCTTGGTCACCGACTTCCCGTCGTGTGNCTTGTGACGGTCCAATAGACAAAC
GCTGAGCAACTCGCATAGTACGGAGAGTCCTATAAGCGAAGTATTAGGCGGTACACATTCATACTCAGACTGCTTCCGTGATGTCATCTCTCATTTCTCA
TACCTGGAGAACCATAGGACTTCGAGCTGCCGTACTGTCTGCTCTTCGTACCTTATCATCTTTATCACAAAGTATCAATCATATCCATAATTACTACTAA
ATTCCTCTTCATATCCTCTCTCGCTTTGAAAACCCCGCATATCCTCCTTATCCTCTTTGTGCCTTATTCTATATATCCCGCTCCACCCTTT
>LE_HBa0060J03_SP6_82996 (trimmed for quality and cloning vector)
TA

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
0.828516
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0060J03
Clone
Clone name
hba-60j3
LE_HBa0060J03
C02HBa0060J03
P060J03
Clone type
BAC
Contamination
none
Estimated length
139,766
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found