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Clone Read LE_HBa0060H22_T7_82939

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0060H22_T7_82939
Primer
T7
ID from Seq. Facility
LE_HBa_060_H22-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
570 trimmed for vector and quality, 865 raw
Sequence
>LE_HBa0060H22_T7_82939 (raw untrimmed)
GCCCTCTTTCCGTATTAAGGGGTACTCCTAGAGTCGACCTGCAGGCATGCAAGCTTTTCTTGAATAGATTTCACTTTCCCTTAAAATTCCCTCAAAAGGN
NAGNANNANAAGGAGGAACCCTTAAAGGATCAAACCAANCAATGGGAGAACTANATCTTCTCCCATACAGTGCCTCAAAGAGGGCCATATCAATCCTGGA
GTGATAGCTATTGTTGTACGAGAATTCCGCTAAGGGTAAGAAGCTATCCCAATGGCCACCAAACTCTATCACGCATGCACAAAGAATATCCTCCAACACT
TGAATCGTTCTCTCAGACTGACCATCGGTCTGAGGATGGAACGCAGTACTAAGGTCCAATCTAGTACCCAATTCCGCATGTAATGTTTTCCAAAACTTAG
AAGTAAACTGCGTACCTCTATCTGATATAATGGAGAGTGGAACCCCATGCAATCGAACAACTTCTGAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTA
AGTCACCTTGACCGGAATGAAGTGAGCAGACTTAGTTAACCTATTCACAATTCCCCAAATGGAGTCATACTTACCCATTGTCTTGGGAAGACCAACCACG
AAGTCTATTGCAATCCTTTCCCATTTCCATTCAGGAATGGGCATTCTCTGAAGTGTTCCTCCTAGCCTCTGGTGTTCATACTTTACTTGTTTCCAATTTG
GATATCTGGCAACAAAATCAACAATGTCGCGCTTCATTTCTACCCCACCAAAGTGTTTGTTATAAGTCACGGTACATCTTGGTTGCACAAAGATCTATTA
AATACTTGAACTATGAACCTCTTTCTTAATAGTGTTCATCCCCGCCCCAAAAGGGGGNAGACATA
>LE_HBa0060H22_T7_82939 (trimmed for quality and cloning vector)
ATCTTCTCCCATACAGTGCCTCAAAGAGGGCCATATCAATCCTGGAGTGATAGCTATTGTTGTACGAGAATTCCGCTAAGGGTAAGAAGCTATCCCAATG
GCCACCAAACTCTATCACGCATGCACAAAGAATATCCTCCAACACTTGAATCGTTCTCTCAGACTGACCATCGGTCTGAGGATGGAACGCAGTACTAAGG
TCCAATCTAGTACCCAATTCCGCATGTAATGTTTTCCAAAACTTAGAAGTAAACTGCGTACCTCTATCTGATATAATGGAGAGTGGAACCCCATGCAATC
GAACAACTTCTGAGATGTAAAGTTTGGCTAACTTCTCTGCATTGTAAGTCACCTTGACCGGAATGAAGTGAGCAGACTTAGTTAACCTATTCACAATTCC
CCAAATGGAGTCATACTTACCCATTGTCTTGGGAAGACCAACCACGAAGTCTATTGCAATCCTTTCCCATTTCCATTCAGGAATGGGCATTCTCTGAAGT
GTTCCTCCTAGCCTCTGGTGTTCATACTTTACTTGTTTCCAATTTGGATATCTGGCAACAAAATCAACAA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.974495
Expected error %
1.40852
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38745.1| Score 288 E Value 6e-77 Identity 24.30% Align. Length 563bp (98.77%) Frame 3
putative polyprotein, 3'-partial [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 284 E Value 8e-76 Identity 24.10% Align. Length 563bp (98.77%) Frame 3
putative polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0060H22
Clone
Clone name
hba-60h22
LE_HBa0060H22
P060H22
Clone type
BAC
Contamination
none
Estimated length
120,580
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found