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Clone Read LE_HBa0055F13_T7_82057

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0055F13_T7_82057
Primer
T7
ID from Seq. Facility
LE_HBa_055_F13-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
758 trimmed for vector and quality, 924 raw
Sequence
>LE_HBa0055F13_T7_82057 (raw untrimmed)
GCTTAACTTGGTCACCGGGGTTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCAAATACAACTTAAGATGTGGCGTTTAGTACAATAGTAATTAGTAT
AGAATCATCTTTTGATTCTTAATACGGTTGTGATATTAAATTGATTATGCATTTAGTTATAACTCTATTCAACAAGATGATTATAGTATTGAAGATTAAT
TTCTTGAATAATATTTACACTATCAGTATATATAACTAAAATGAGATTTTCATGTTTTTCCGTACACCAATCCCAAAAAAAAGGTTTTATTATCTTTTTC
TTGTTGTAGAACAAGACCTTAATTAGAAGGCAAGTTTTAAGTTAATGTAATCGTAATTTAAACGTCACAACGTCGATTTAATTGCATGAAACGAAGAAAT
TAATGAAGATAATTGATACAAACAAGAACATAATAATCAAATTAAATACATACCTTTGAGATTTCATGTACAACTTCATCAGAATTTGAAGAACCAAAAG
AATTAACAAGTTGGCCAAAAATAAGTGTCATTAAAGGTTGAGTTAATCCATTGCCAATAGCACCAATTGTTCCAATTATCATTAGGGCAATATCAAATTT
ATCTGCAAAAGAAAATAATTTGTAGAATGACACTTTTTGATCTTCATCTCTTTTTTTTTCTCCATTATTATTATTATCCTCCATCTTCAAAAAAAAAATT
ATAAAAAAAAAAAGAGAGAGAGAAGATTAATATGATATATCCCTTAGGGTTTTAAAGAAAATCAAGAAGAAGAAAAAAAAGTATTTTTATAGATAAATAA
AGTTTGTTTAAATTTCAGGAATTTTTTTAATTAGGTTTCCATATAGCATTTTTAAACCCGTATTTACTTTTTTTTCCCTTATTTAGTTGACTCCGTTTGA
ATTTTTCCCATTTGGAAAAAAAAA
>LE_HBa0055F13_T7_82057 (trimmed for quality and cloning vector)
AGCTTCAAATACAACTTAAGATGTGGCGTTTAGTACAATAGTAATTAGTATAGAATCATCTTTTGATTCTTAATACGGTTGTGATATTAAATTGATTATG
CATTTAGTTATAACTCTATTCAACAAGATGATTATAGTATTGAAGATTAATTTCTTGAATAATATTTACACTATCAGTATATATAACTAAAATGAGATTT
TCATGTTTTTCCGTACACCAATCCCAAAAAAAAGGTTTTATTATCTTTTTCTTGTTGTAGAACAAGACCTTAATTAGAAGGCAAGTTTTAAGTTAATGTA
ATCGTAATTTAAACGTCACAACGTCGATTTAATTGCATGAAACGAAGAAATTAATGAAGATAATTGATACAAACAAGAACATAATAATCAAATTAAATAC
ATACCTTTGAGATTTCATGTACAACTTCATCAGAATTTGAAGAACCAAAAGAATTAACAAGTTGGCCAAAAATAAGTGTCATTAAAGGTTGAGTTAATCC
ATTGCCAATAGCACCAATTGTTCCAATTATCATTAGGGCAATATCAAATTTATCTGCAAAAGAAAATAATTTGTAGAATGACACTTTTTGATCTTCATCT
CTTTTTTTTTCTCCATTATTATTATTATCCTCCATCTTCAAAAAAAAAATTATAAAAAAAAAAAGAGAGAGAGAAGATTAATATGATATATCCCTTAGGG
TTTTAAAGAAAATCAAGAAGAAGAAAAAAAAGTATTTTTATAGATAAATAAAGTTTGT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.902822
Expected error %
1.19105
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g18050.1 Score 98 E Value 6e-21 Identity 21.30% Align. Length 224bp (29.55%) Frame 1
68417.m02686 ABC transporter family protein contains Pfam profile: PF00005 ABC transporter; similar to multidrug-resistant protein CjMDR1 GI:14715462 from [Coptis japonica]
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g46540.1 Score 90 E Value 1e-18 Identity 18.60% Align. Length 209bp (27.57%) Frame 1
68418.m05730 ABC transporter family protein contains Pfam profile: PF00005 ABC transporter; similar to multidrug-resistant protein CjMDR1 GI:14715462 from [Coptis japonica]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB53646.1| Score 98 E Value 3e-19 Identity 21.30% Align. Length 224bp (29.55%) Frame 1
multidrug resistance protein/P-glycoprotein-like [Arabidopsis thaliana] pir||T14805 hypothetical protein F15J5.20 - Arabidopsis thaliana
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_193539.2| Score 98 E Value 3e-19 Identity 21.30% Align. Length 224bp (29.55%) Frame 1
ABC transporter family protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0055F13
Clone
Clone name
hba-55f13
LE_HBa0055F13
C02HBa0055F13
P055F13
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found