Clone Read LE_HBa0055E23_SP6_82028

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0055E23_SP6_82028
Primer
SP6
ID from Seq. Facility
LE_HBa_055_E23-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1065 raw
Sequence
>LE_HBa0055E23_SP6_82028 (raw untrimmed)
TGCTATACATAAAAACTAATTAAAAATAAGAAAAAAAAACATCACCGATCGAGTATATAGCACAAAGCACACACCACACCTGATGCTGACGTCAAAGCCA
CTCTTATGAGAGATGGCCATAGGTAAAATAATAATTTCAAGTGGGATCTCTTTCTTTTCTGTGTATTTGTTGTTATTTGGTCATCAATATTTGTTATATT
AAACTAAATTTATTTACTGCGTCTTATCTTTCCTACAAACGATGAAATTCGAAAGTAGACAAACAAGGTTACAA
TAAACTTTTATGATAATATATGCATA
TAATGACTAATTTCATTATATAATTAAATATTTCATGTTCATATAACATAATAAATGTTCGCTACTGACACGCTTCACAACACATGATACATCTATGACA
CTTATTTATAATCACTCAACAACCAATTCTACTCATTTATTTTTATTTATACTCTTTTAGTATTTCTTTGTTTTTTCACTCTTCAAACTAAATATAGGAA
AAAATCTGTAGTTAGTCATACCAACTCTCATGAAGAGAGCGAAAAGAAATGATCTGTCTCGCAGCCATACGTGTCGTCAAAGAATGAAGTTTACTTATGA
AGCATGAATTCAAAAACTAGTAGACCAGTATTTATACCTATGCTATACATCTGAAAAAGTATACAACTTGGCTTGCCAAACTAACGTAAGAACAGCAAAC
ACAGTAATAATTCAATCAATAAATTGTGAAGGGTTAGTGTTTCGTTATGAACTTAAAACAACCCATCAGGGTAAGGAAGTCAACCGCTCAAAAAGCTCTC
AAACCAAATTTATATCGTAGATTACAGAAATAAATGAACTTTGTTTTGAATCACCTACTAAGAATAAACAAAGATAAATCAATAAAAACGAAATCAAAAA
TATTTCCATCTCCGTGTAAGGAATTCGACAACATGCATACTTGAGAAATCTATATCTAATAAAACAAAATCTTATCCTAGTAAACCGCAGTCACACCATA
AACCACTTTCATATTTTGATATAACGCACAAACGCAAATTTGAAAAACCAAGAAGAGGCATACTA
>LE_HBa0055E23_SP6_82028 (trimmed for quality and cloning vector)
TA

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.60104
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0055E23
Clone
Clone name
hba-55e23
LE_HBa0055E23
C01HBa0055E23
P055E23
Clone type
BAC
Contamination
none
Estimated length
96,132
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found