Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0052N10_SP6_81666

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0052N10_SP6_81666
Primer
SP6
ID from Seq. Facility
LE_HBa_052_N10-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
530 trimmed for vector and quality, 834 raw
Sequence
>LE_HBa0052N10_SP6_81666 (raw untrimmed)
GTGTGGCTTAGGAAGACTAAGGCTTTTACTTCTTCCATCCAACTGCAACCAGGCAATTTGTTGTATCCCTTTCCTTTAACACCTTTTCTCAACCTCTCAG
CATCATCCCACCTTCCTTAAGAAGCATAAATATTTGCAAGCAGAGAAAGATATCCAGAACTGTCAGGTTCCAACTCTATACAACGTGTCGCTGCGATCTC
TCCAAGCTCTAAATTGTTATGCAAACTGCAACCAAGAAGCAATGCACCCCACACACCAGCATGAGGCTCTATTGACATGCTTTTAATCAACCCATGTGCT
TCTTCTAACCGCCCCCCCCTACTTAAAAGGTCAACTACTATAGCGTAACCCCCAACTGAGGGAGAAAGACCATACTTCTGTAAGGAAATAAAACAACGGT
ATGCTTCTTCTACCATTCCAATGTGACTGTAGGCAGTCAATATCCCTGTGATTGTGACTATGTTTGAGTTAATTTCAGCATTCATCATCTCATCCAACAA
CTTGATGGCATCATTAGCCCTACCATTTATTCCACATCCCAGTATCATGGCAGTATATGCTACCCAATTTTTCTTTTTCAAGCCGTGGAACAGCTTGTGA
AGCTTTATCATTACTTCCATTTTTTTTTTTTTTTTGCGATCGAACTAATTGGACATTAACCATTCAATTTGATTTTCCGTTTTCGTGAATGATCGACTTC
AGTCCAATAACCAAATCTTTACGTTTTCCTCGTCTTGAGATTTTCGATGTAATTACGGATGTTTGCTATATGTATTTTTCAATCCTGGAGACTAAATTTT
TTTGATATACATTTTTATATGAAATTGCCGGCAA
>LE_HBa0052N10_SP6_81666 (trimmed for quality and cloning vector)
CTTTTACTTCTTCCATCCAACTGCAACCAGGCAATTTGTTGTATCCCTTTCCTTTAACACCTTTTCTCAACCTCTCAGCATCATCCCACCTTCCTTAAGA
AGCATAAATATTTGCAAGCAGAGAAAGATATCCAGAACTGTCAGGTTCCAACTCTATACAACGTGTCGCTGCGATCTCTCCAAGCTCTAAATTGTTATGC
AAACTGCAACCAAGAAGCAATGCACCCCACACACCAGCATGAGGCTCTATTGACATGCTTTTAATCAACCCATGTGCTTCTTCTAACCGCCCCCCCCTAC
TTAAAAGGTCAACTACTATAGCGTAACCCCCAACTGAGGGAGAAAGACCATACTTCTGTAAGGAAATAAAACAACGGTATGCTTCTTCTACCATTCCAAT
GTGACTGTAGGCAGTCAATATCCCTGTGATTGTGACTATGTTTGAGTTAATTTCAGCATTCATCATCTCATCCAACAACTTGATGGCATCATTAGCCCTA
CCATTTATTCCACATCCCAGTATCATGGCA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.958516
Expected error %
1.4435
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g22760.1 Score 193 E Value 5e-50 Identity 19.00% Align. Length 482bp (90.94%) Frame 3
68417.m03286 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g44230.1 Score 159 E Value 1e-39 Identity 16.70% Align. Length 515bp (97.17%) Frame 3
68418.m05411 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_913992.1| Score 197 E Value 1e-49 Identity 17.70% Align. Length 518bp (97.74%) Frame 3
putative pentatricopeptide (PPR) repeat-containing protein [Oryza sativa (japonica cultivar-group)] dbj|BAC57819.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB79231.1| Score 193 E Value 2e-48 Identity 19.00% Align. Length 482bp (90.94%) Frame 3
predicted protein [Arabidopsis thaliana] emb|CAA16561.1| predicted protein [Arabidopsis thaliana] ref|NP_194007.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] pir||T04571 hypothetical protein T12H17.150 - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0052N10
Clone
Clone name
hba-52n10
LE_HBa0052N10
P052N10
Clone type
BAC
Contamination
none
Estimated length
90,246
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found