Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0052L14_T7_81579

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0052L14_T7_81579
Primer
T7
ID from Seq. Facility
LE_HBa_052_L14-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
454 trimmed for vector and quality, 926 raw
Sequence
>LE_HBa0052L14_T7_81579 (raw untrimmed)
CCCGGCGGACCTCTATAAATCGACCCCGCTGGGCCGGGGATCTCTACAGTCTACCTGCAGGCATGCAAGCTTCCTGACTAAGGTAGATACGGTTCGAACC
CAAAGTTTTTTTTCTAATTTATCTAAGAGGCCCATTGTGATGGTTGGTTCATTGTTCTTGCAATACTCATAAGCTACAGTCAGCCGTGTAAGTTCACATG
GGGGAATCCCTTTATCAACCATTGAATTGTAAAGATCTCTAGCCTCATCCAACTTTGACTCCTTACAAAGCCCACTAATCAAAGCACCATAAGTGAGGCT
ATCAGGTACACAACCATATTCTCCCATCCTCTGGAAGTACTTCTTGGCCATGGCCACATTTTTATCTCTACAATATCCACATATCATGGAAGTACAAGTC
TCTTTGGTAGGTATCAAACCTAAAATTACAGCATCATCAAAGAGCTTTTCACTGTCTTTCATTTTCTTTTGCCTACACAAGGCAGCAATTAATGTGGTGT
ATGTATGCATATCATGGCCAATACCAGCTTTAACCATCTTACTGAAAAGAGCAAAGGTTTGTCCATTATCTCCCCTTTTGTCTCCCTGGAAACTAATGAA
TGGCGTAACTCCCCAAATCCGGTCATATTGCCATTTGTTTCTTTTCCTTTATCATCTACAAAATCCCCATAACACGCTCATTCGTACGCTACCATCGGTT
ACTGTTGATACCTCAAAACTGCTCGAGACAAGAACAATCCTACCTTCTCAAGAAATTCGCTAACAAATCACCTATCATCTACATCTACGACACTTTGGCC
TCTCCAATGTATTGCCTATGCCTATTTAAAGTACCCAACTATAGACATGCTCCAATACTGTGATTATCAACACTATTCATAAAGAACTCCAGTATAGTCT
ATCAGAACCATAAACAACTCTTCTCT
>LE_HBa0052L14_T7_81579 (trimmed for quality and cloning vector)
TGCAGGCATGCAAGCTTCCTGACTAAGGTAGATACGGTTCGAACCCAAAGTTTTTTTTCTAATTTATCTAAGAGGCCCATTGTGATGGTTGGTTCATTGT
TCTTGCAATACTCATAAGCTACAGTCAGCCGTGTAAGTTCACATGGGGGAATCCCTTTATCAACCATTGAATTGTAAAGATCTCTAGCCTCATCCAACTT
TGACTCCTTACAAAGCCCACTAATCAAAGCACCATAAGTGAGGCTATCAGGTACACAACCATATTCTCCCATCCTCTGGAAGTACTTCTTGGCCATGGCC
ACATTTTTATCTCTACAATATCCACATATCATGGAAGTACAAGTCTCTTTGGTAGGTATCAAACCTAAAATTACAGCATCATCAAAGAGCTTTTCACTGT
CTTTCATTTTCTTTTGCCTACACAAGGCAGCAATTAATGTGGTGTATGTATGCA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.964498
Expected error %
0.302187
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g19900.1 Score 187 E Value 3e-48 Identity 61.20% Align. Length 440bp (96.92%) Frame 1
68417.m02916 glycosyl transferase-related contains Pfam profiles PF01535: PPR repeat, PF04572: Alpha 1,4-glycosyltransferase conserved region, PF04488: Glycosyltransferase sugar-binding region containing DXD motif; several hypothetical proteins - Arabidopsis thaliana
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g46100.1 Score 89 E Value 1e-18 Identity 36.60% Align. Length 401bp (88.33%) Frame 1
68418.m05668 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB78991.1| Score 187 E Value 1e-46 Identity 61.20% Align. Length 440bp (96.92%) Frame 1
putative protein [Arabidopsis thaliana] emb|CAB52870.1| putative protein [Arabidopsis thaliana] pir||F85225 hypothetical protein AT4g19900 [imported] - Arabidopsis thaliana ref|NP_193724.1| glycosyl transferase-related [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAB08255.1| Score 89 E Value 5e-17 Identity 36.60% Align. Length 401bp (88.33%) Frame 1
salt-inducible protein-like [Arabidopsis thaliana] ref|NP_199422.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0052L14
Clone
Clone name
hba-52l14
LE_HBa0052L14
C02HBa0052L14
P052L14
Clone type
BAC
Contamination
none
Estimated length
91,375
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found