Clone Read LE_HBa0052J15_SP6_81484

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0052J15_SP6_81484
Primer
SP6
ID from Seq. Facility
LE_HBa_052_J15-SP6
Chromatogram
Sequence 
Version
1 (current)
Length (bp)
26 trimmed for vector and quality, 880 raw
Sequence
>LE_HBa0052J15_SP6_81484 (raw untrimmed)
GGGGGCGGAGGGGGCACGTCGAAGACGAGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCNTAAAGGNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCCCTTANGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNNNNNCNNNNNNNNNNNNCNNNNNNNNNTC
TCNCNNAAATANCTATNNNTNCCTACCANCCTCATTATACATNAACAAAAAANCAAAAACNTCCACCTCAACACCTTTCATACAA
AATCACATAATACAC
ATACTTTATCTTAAAAACACATTAACAAAACCTAATCCATTTATTTATTCATCTTATCTTCATCTCCACATCTATTCATACACAATCTCCCCATCATCAA
AACACCTTANCAACATACAACAATATTTCAACTAACCACACTCACTAACATACCTCACCAAACTCAATCAANTAACTCAATTAATCTTTAACCACCACAC
ATCTCAAAACTTCACTCAACTACATAAACATCATCTCAATTATCCAAAACATCTACCCTCCCACCAAAAAATAACCCCATTATCTCAATATCAAAATTTC
CCATATTTATCACTTATAATTCTTAAAAATCATTCACCCAACCACCCCACATCTCATTACAACCAACACAATCCCACAACAACTACCACCAATACAAATA
ATCTTAAACACCACCTAAACTATTCAACCTACTACACACCCTTTTAACTCAATTCTAACCAACCCACCTCCAATATTCCACCCAAACAAACATCAAAAAA
AAACAACACAAAACATAAATATAACACCTCATCCTTTAACAACCCCTCTCATCAAAAATATAAAAAACAACCATAACCAC
>LE_HBa0052J15_SP6_81484 (trimmed for quality and cloning vector)
AATCACATAATACACATACTTTATCT

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.28925
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0052J15
Clone
Clone name
hba-52j15
LE_HBa0052J15
C02HBa0052J15
P052J15
Clone type
BAC
Contamination
none
Estimated length
114,722
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found