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Clone Read LE_HBa0052C07_T7_81133

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0052C07_T7_81133
Primer
T7
ID from Seq. Facility
LE_HBa_052_C07-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
691 trimmed for vector and quality, 739 raw
Sequence
>LE_HBa0052C07_T7_81133 (raw untrimmed)
GCTGCGGTCCGGGGGATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTCTGCTGCTTCTTTTTCCTCCCTTTTCCTTACTTCTGCCTGCAACATTATAAA
TTACATTTTAGGAAGTCCTCAAGTCAAACAGTGAACAGCAGAAACTCATGAAGAACTATGTTCATTTAGCATATTCAATCCTCTAGAGGGAAGACGACGA
CAGACATGCATCTTTACAAGTCGTTTTCTTTAGGCATAATACATAAACGTGTCCTTTAAATTAGCTCAGCTGGCATCTATGCCCTCCAACTTAGGGTGTG
CAAAAGTAGGCACTTAAAGTTGAACAGCCACACTTCCTATGTGACATATAAAATCAGTTGCTCTATCTCACGCGAATTCCCACATTGGACGCATGTGTCT
ACTTGTTCACCTTTATACAAGTTTAAGTGCCTACTTGCGCGGACCCAAAGTAGCATTGAACAGAAAGCAGCCTACTACATTTATCTCCCTCACATTTCCG
AGAAATCTATATACTAGAAAATTATATTTACAAGTCCTGAATCCTGATAAACATAATACTCTCTTATTTCATAAGTGTATCAATACTCCCTTGCAAGTTT
TAGTAGTTAAACCAACATATAACCCAAAATATTGTGTGCAAAGGAACTCTTATAACAACAATATCATATAAATAGGGACAGAATTACAGAGACAAATTAG
GTAAATATATTATATCCCCTTCCATTTTCTTCTCTGGGA
>LE_HBa0052C07_T7_81133 (trimmed for quality and cloning vector)
AGAGTCGACCTGCAGGCATGCAAGCTTCTGCTGCTTCTTTTTCCTCCCTTTTCCTTACTTCTGCCTGCAACATTATAAATTACATTTTAGGAAGTCCTCA
AGTCAAACAGTGAACAGCAGAAACTCATGAAGAACTATGTTCATTTAGCATATTCAATCCTCTAGAGGGAAGACGACGACAGACATGCATCTTTACAAGT
CGTTTTCTTTAGGCATAATACATAAACGTGTCCTTTAAATTAGCTCAGCTGGCATCTATGCCCTCCAACTTAGGGTGTGCAAAAGTAGGCACTTAAAGTT
GAACAGCCACACTTCCTATGTGACATATAAAATCAGTTGCTCTATCTCACGCGAATTCCCACATTGGACGCATGTGTCTACTTGTTCACCTTTATACAAG
TTTAAGTGCCTACTTGCGCGGACCCAAAGTAGCATTGAACAGAAAGCAGCCTACTACATTTATCTCCCTCACATTTCCGAGAAATCTATATACTAGAAAA
TTATATTTACAAGTCCTGAATCCTGATAAACATAATACTCTCTTATTTCATAAGTGTATCAATACTCCCTTGCAAGTTTTAGTAGTTAAACCAACATATA
ACCCAAAATATTGTGTGCAAAGGAACTCTTATAACAACAATATCATATAAATAGGGACAGAATTACAGAGACAAATTAGGTAAATATATTA

This is probably not a useful sequence.

Problems:
  • Probable foreign DNA contamination
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.959399
Expected error %
0.306277
Sequence Annotations 
Automatic Annotations
NCBI UniVec vector sequences (screening/vector/UniVec)NCBI BLAST
gnl|uv|X65333.1:1-122 Score 62 E Value 8e-11 Identity 97.10% Align. Length 34bp (4.92%) Frame 2
Cloning vector pSP73
NCBI UniVec vector sequences (screening/vector/UniVec)NCBI BLAST
gnl|uv|X65332.1:2436-2462-49 Score 62 E Value 8e-11 Identity 97.10% Align. Length 34bp (4.92%) Frame 2
Cloning vector pSP72
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0052C07
Clone
Clone name
hba-52c7
LE_HBa0052C07
P052C07
Clone type
BAC
Contamination
none
Estimated length
105,760
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found