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Clone Read LE_HBa0037I08_T7_80655

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0037I08_T7_80655
Primer
T7
ID from Seq. Facility
LE_HBa_037_I08-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
711 trimmed for vector and quality, 892 raw
Genbank Accession
DU076051
Sequence
>LE_HBa0037I08_T7_80655 (raw untrimmed)
CTGGGGCCCGGGGGGACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTATAAAATTATAGATCTACTAATACACTCATCATAATATATATTAGCTTGGG
TTATTAAATAAAATTGAAAATAAATATTACTATAAAAGAAAAATTAACTAGATACATATGATAAACTAATTTCTCCTCAAGTTTAAATGTGATGTATTAT
TGTTAATGTTAGCTAATGACAGAGAAATTCATTATTATTATTATAGGAATATATCTTGTGAATCTATTTTAATTTATTTATTTTAAAAGATTTTAATTCA
ATTATCTTGGTTATTTCTAATTTAATTTTCTTCTTTAAGTGTTTTTCTTGTCAAATTTATCAAAGCTTGAGTTTGTGGTAGTTGATATTGTCGAAAAAAT
TATTTGTCATGGGTTCTTGATGCTGAAATTCACCTTGACGCTAAAGGTCTTGGTGATACTATTAAACAAGAAAATAAAGCATCAAGTCAAGATAAATCAA
GGCCATGATTTTTCTCTGACATCATCTTCACGAGTGATTAAAAAATGAATATTTAATTGTGAAAGACCTCCTTGAACTATGGATTAATTTGAAGGATAGG
TATCACCACCTAAAACTTACGGTGTTACCAAAAGCTCGATACAAGTGAATACACCTTCGATTTTAAGATTTTAAAATTGTAACTGAGTATAATTCTGTTA
TTCATAAAGTAAGTTCCCTATTAAAAATATGTAGAAGATACTATCACTAATGATGACTTACTTGAGAAAACTTTTTCCACTTTTCCCCCCTTCAATGGTG
TCTTTACAACACAATACCGTGAAAAGGGGGGTTAAAAAATAATTTTGAACTAATTTACTTGACTACTTTGGACTTGAAAAAAAAAAAAAATT
>LE_HBa0037I08_T7_80655 (trimmed for quality and cloning vector)
AGCTTTATAAAATTATAGATCTACTAATACACTCATCATAATATATATTAGCTTGGGTTATTAAATAAAATTGAAAATAAATATTACTATAAAAGAAAAA
TTAACTAGATACATATGATAAACTAATTTCTCCTCAAGTTTAAATGTGATGTATTATTGTTAATGTTAGCTAATGACAGAGAAATTCATTATTATTATTA
TAGGAATATATCTTGTGAATCTATTTTAATTTATTTATTTTAAAAGATTTTAATTCAATTATCTTGGTTATTTCTAATTTAATTTTCTTCTTTAAGTGTT
TTTCTTGTCAAATTTATCAAAGCTTGAGTTTGTGGTAGTTGATATTGTCGAAAAAATTATTTGTCATGGGTTCTTGATGCTGAAATTCACCTTGACGCTA
AAGGTCTTGGTGATACTATTAAACAAGAAAATAAAGCATCAAGTCAAGATAAATCAAGGCCATGATTTTTCTCTGACATCATCTTCACGAGTGATTAAAA
AATGAATATTTAATTGTGAAAGACCTCCTTGAACTATGGATTAATTTGAAGGATAGGTATCACCACCTAAAACTTACGGTGTTACCAAAAGCTCGATACA
AGTGAATACACCTTCGATTTTAAGATTTTAAAATTGTAACTGAGTATAATTCTGTTATTCATAAAGTAAGTTCCCTATTAAAAATATGTAGAAGATACTA
TCACTAATGAT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.906212
Expected error %
0.252352
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g33303.1 Score 83 E Value 2e-25 Identity 53.80% Align. Length 334bp (46.98%) Frame 2
68418.m03951 hypothetical protein
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g04135.1 Score 83 E Value 1e-16 Identity 17.90% Align. Length 233bp (32.77%) Frame 1
68415.m00397 hypothetical protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAK84482.1| Score 93 E Value 4e-29 Identity 59.00% Align. Length 337bp (47.40%) Frame 2
unknown [Lycopersicon esculentum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_680293.1| Score 83 E Value 9e-24 Identity 53.80% Align. Length 334bp (46.98%) Frame 2
hypothetical protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0037I08
Clone
Clone name
hba-37i8
LE_HBa0037I08
P037I08
Clone type
BAC
Contamination
none
Estimated length
120,175
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found