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Clone Read LE_HBa0021G07_SP6_79788

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0021G07_SP6_79788
Primer
SP6
ID from Seq. Facility
LE_HBa_021_G07-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
644 trimmed for vector and quality, 825 raw
Sequence
>LE_HBa0021G07_SP6_79788 (raw untrimmed)
GTGGTCTGGTCAGCAAGTATCAGCTTTTGGAGAGATCACACTTTTATTAAGACAGAAGTTTTGTCCACTTCCTTACATGTATTCCGTCGAAGGCAAAGAG
GTTTTCAGTAACCCTAGAGCTAGTTCAACTTGAAGACTGTCCTCTCTATATGGAATCCCCAGCAGTCCACAAAAGAAGGCAGTACCAAAAAACCTAGCAT
AAGGAAGGCGATAGACGATGTAATTGTAGAAAGAATCAAAATGAAAGTTGAGGATAATTCTTTTTTGACCTATATTCTTGATTACGAATCAAGAAGCCTT
TATCACCAAGAGTGAGTTCTTCCTTTCATGAAATTAAGGAAATAAAATGTTTTTCATCTTGTCTTAGGTATGTAATTTGAAATTAAAATATAGATAATGT
AGTTTTATATGGTTCTCTATCTCCCGAAAATCCATTTTAGTTAAAAATTTATGTGAGAAACAGTAAGATCTGATAATCAATCTTATCCGATCTTTTATAC
AGAATTTCAACGTTTGGTGAGTCGAGGGTCTTTCGGAAACGGCCTATCTACCTCCACGAGGTAGTAGTACAATCTGTGTACATTCTACCCTTCCCAACCC
ATTTAGTGGGATTCATGGGGTATGTTGTTGTTGTTAACAACCTCTGGTGAGATTTATATGGTCAACCTCAGTTTTAGTTAACTTGGGGACTTAAATGAAT
GCTTGGGGGAATTGCATCATATATTGGTTTATAATGGATTACTGATCTTGCAGAATGGCCATAAGGCCAAAAATATTACTGATTTGCAAAACTCCTCTCC
GGCCACAACATACCTTTCTTTTTCN
>LE_HBa0021G07_SP6_79788 (trimmed for quality and cloning vector)
AGCTTTTGGAGAGATCACACTTTTATTAAGACAGAAGTTTTGTCCACTTCCTTACATGTATTCCGTCGAAGGCAAAGAGGTTTTCAGTAACCCTAGAGCT
AGTTCAACTTGAAGACTGTCCTCTCTATATGGAATCCCCAGCAGTCCACAAAAGAAGGCAGTACCAAAAAACCTAGCATAAGGAAGGCGATAGACGATGT
AATTGTAGAAAGAATCAAAATGAAAGTTGAGGATAATTCTTTTTTGACCTATATTCTTGATTACGAATCAAGAAGCCTTTATCACCAAGAGTGAGTTCTT
CCTTTCATGAAATTAAGGAAATAAAATGTTTTTCATCTTGTCTTAGGTATGTAATTTGAAATTAAAATATAGATAATGTAGTTTTATATGGTTCTCTATC
TCCCGAAAATCCATTTTAGTTAAAAATTTATGTGAGAAACAGTAAGATCTGATAATCAATCTTATCCGATCTTTTATACAGAATTTCAACGTTTGGTGAG
TCGAGGGTCTTTCGGAAACGGCCTATCTACCTCCACGAGGTAGTAGTACAATCTGTGTACATTCTACCCTTCCCAACCCATTTAGTGGGATTCATGGGGT
ATGTTGTTGTTGTTAACAACCTCTGGTGAGATTTATATGGTCAA

This is probably not a useful sequence.

Problems:
  • Probable foreign DNA contamination
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.960165
Expected error %
0.310833
Sequence Annotations 
Automatic Annotations
Nicotiana tabacum Chloroplast (screening/organelle/nicotiana_tabacum_chloroplast)NCBI BLAST
gi|11465934|ref|NC_001879.1| Score 268 E Value 2e-73 Identity 90.60% Align. Length 244bp (37.89%) Frame 1
Nicotiana tabacum plastid, complete genome
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0021G07
Clone
Clone name
hba-21g7
LE_HBa0021G07
P021G07
Clone type
BAC
Contamination
none
Estimated length
105,493
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found