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Clone Read LE_HBa0034N16_SP6_7950

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0034N16_SP6_7950
Primer
SP6
ID from Seq. Facility
LE_HBa_034_N16-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
597 trimmed for vector and quality, 819 raw
Genbank Accession
DU027231
Sequence
>LE_HBa0034N16_SP6_7950 (raw untrimmed)
ATTGTTAGGTTACCGAATANGAATAGAAAAANATCATCCCACTTTCTATCCCGTAAAGACCACTTATNTCGGTGGAACATTATGTCAAGTTTTACATTGA
AGAAGTGGTAAGCTTCATGGAGTCCTAGTTTCAATCATTTCAACTAGAGGTGCACAGTTTACTGCTCAGTTCTGGAAGTTTTTCCAGAAAGGTTTAGGTT
CAACGGTGAACTTAAGCACCATTTTTCATCCTCAAACAGATGGACAAGAAAAACGTACTTTCCATACCCTAGAAACAATCTTAAGAACTTGTGTTATTGA
TTTCAAGGGGAATTGGGATGATACCTCTCATTGAGTTTGCTTATAATAATAACTATCATTCGAGCATCCAAATGGCTGCATATGAAGCTCTTTATGGGAG
AAGGTGTAGATCTCCTATTGGGTGGTTCGAGGTTGATGAAGAAGGGTTGATATGACCAGTTCTAATTTACCAAGCCAATTACAAGGTGAAGGTGATTCAA
GAGAGATTGAAGACGACACAGAGTCGTCAAAAGTCCTAAACAGACGTGAGGAGAAGGCCATTGGAGTTTAAAGTGGATGACTGGGTATATCTAAAAGTTC
TTGCATGAAGAATGTTATGAGGTTTGTTAATAAAGGGAAACTTAGTCCCTGGTATATTGGTCCTTATGGAATATTGCAGGAGAAATGGGGATGTAGATTA
TGAGTTGGAGCTTCCCCAAGATTTATCACTCGTTCTTTTGATATTTTCTATTTCCACGTTGAAAAAGTTCCTGGGTAATCCCTTCATTGATTTCACCCAA
CTGAAAAATGTTGGGAATA
>LE_HBa0034N16_SP6_7950 (trimmed for quality and cloning vector)
TATCCCGTAAAGACCACTTATNTCGGTGGAACATTATGTCAAGTTTTACATTGAAGAAGTGGTAAGCTTCATGGAGTCCTAGTTTCAATCATTTCAACTA
GAGGTGCACAGTTTACTGCTCAGTTCTGGAAGTTTTTCCAGAAAGGTTTAGGTTCAACGGTGAACTTAAGCACCATTTTTCATCCTCAAACAGATGGACA
AGAAAAACGTACTTTCCATACCCTAGAAACAATCTTAAGAACTTGTGTTATTGATTTCAAGGGGAATTGGGATGATACCTCTCATTGAGTTTGCTTATAA
TAATAACTATCATTCGAGCATCCAAATGGCTGCATATGAAGCTCTTTATGGGAGAAGGTGTAGATCTCCTATTGGGTGGTTCGAGGTTGATGAAGAAGGG
TTGATATGACCAGTTCTAATTTACCAAGCCAATTACAAGGTGAAGGTGATTCAAGAGAGATTGAAGACGACACAGAGTCGTCAAAAGTCCTAAACAGACG
TGAGGAGAAGGCCATTGGAGTTTAAAGTGGATGACTGGGTATATCTAAAAGTTCTTGCATGAAGAATGTTATGAGGTTTGTTAATAAAGGGAAACTT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.956564
Expected error %
0.391913
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAV31171.1| Score 155 E Value 7e-65 Identity 63.90% Align. Length 593bp (99.33%) Frame 2
putative polyprotein [Solanum tuberosum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 154 E Value 5e-68 Identity 66.70% Align. Length 593bp (99.33%) Frame 2
putative retrotransposon protein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0034N16
Clone
Clone name
hba-34n16
LE_HBa0034N16
C12HBa0034N16
P034N16
Clone type
BAC
Contamination
none
Estimated length
108,584
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found