Clone Read LE_HBa0016O02_SP6_79394

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0016O02_SP6_79394
Primer
SP6
ID from Seq. Facility
LE_HBa_016_O02-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
2 trimmed for vector and quality, 1242 raw
Sequence
>LE_HBa0016O02_SP6_79394 (raw untrimmed)
TCTAGGCCAGCATCATTCTATCTTAATTTTACNAGGTAATTCNTCNCACATCCGCTACGTCTATAGTCGAGGCACATGCACTGATATGTGTGTATCATAA
GACCACAGTATCACATTTACNCGATCGAAATGATGTATCATNACTCGTCCACANCATTTGTCTGCCTCTNAGTGATAGACATAGATGAGAAGTCANACGA
GAATCGANGTGGTTAAAGAGCGAGATTGATAGCGACTATGAGATAGAGAGANTATATCACGTCACATCTCTAGGATTGATCGTATGTGCTANGTAGCAGG
CGNAGGAGCGCTGCGNCGACGCGTGCGCGNGAACTCGTCCNGTAGCGNGCGGTATGCTGCTTGGTGCACATGTCGCTATACCTGACGTACGCGAGATGAT
AGCTGATGTTGATCATTCACATANTACTTATCGCTCTCTCTACTCTTCTCTCTGTCTGCATAGCCTTGTCTCCTACCTGCCTACAGGCAACCTCGTCTGA
CTTCTCNACTCTGCGCTCATTTCAGTGCGTCGTGCAATACTGTGGTATGTGATGATTTGTCTTATAGTCAGTCTATCTGATAACTATAAAATATAGACAT
AGTTCATTGTATGATCATATACGTTTGCTAAGATGATCAATACAAATCTGTGAGTCAGACGNTAGCTACTTTGCGTCACTGTACATGTCTTCGTCATACT
CTGACGTGNCTNATANTNACCTCTTCCANTGAGTTACATCACTGTNACTACTCGATCCACGACTACATCGCATATCTCCTCACTATCTGTTGTATGTGCA
CACGATCTCGCTATTCTNATTGATCATACATCACAGCTNCATCAACNCATANAGTACTAATACTTCACCTGCTCGATATATACTACTGTTATAGTGTACT
CTCTACATTACGATATGTNCTATACCTTTAGAACGCTATTCTCATCTCTCGCCGCNCNTTCTCTTCCTCACTGTNANCTACTGTACATNACGTGTCGTAG
TGCGTACGTACGTCGAATCCACATGCATTGAGAACACTATACACATAACAATCACTAGTGTAAGATGATATAAGATNAGACTNCGTACGATCTGGCTCNT
CGNCTACTCATATCTTCAATATTGTATCTATGCTGTCTACTACTATATAGATTTATTCTATTCTCACTCTATGATGTGTTATACTAGTTATTATATTATT
AGTNTATTGTACAATTATTTACTATATTATACTNANCTTANT
>LE_HBa0016O02_SP6_79394 (trimmed for quality and cloning vector)
CT

This is probably not a useful sequence.

Problems:
  • Low complexity
  • Short cloning insert
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.9783
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0016O02
Clone
Clone name
hba-16o2
LE_HBa0016O02
P016O02
Clone type
BAC
Contamination
none
Estimated length
103,661
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found