Clone Read LE_HBa0016M20_SP6_79334

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0016M20_SP6_79334
Primer
SP6
ID from Seq. Facility
LE_HBa_016_M20-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
728 trimmed for vector and quality, 860 raw
Genbank Accession
DU062252
Sequence
>LE_HBa0016M20_SP6_79334 (raw untrimmed)
GGCCCAGATTTATTATGGGGAGCTCTTGTGTGAATTTATCTAATTGTTACAATTGGACCTGTGGAGTTTGGAATCAATTTTCAAGTTATAGACATGGACA
CTTCTTACAATCTACTTTTTGGTAGGTCATGGATACACCTTGCTAGAGTTGTGCCATCTACTCTACACCAATTCGTCAAGTTTGAACATGGCAAACAAGA
AATCATTTTCCATGGTGAAGATGATCTCCAAATAACCCGAGATCCTTCAATACCATCCATTGAGTCCAAAAGAGGTTGTGAATCCCTTAATTATAATACT
TTGGAAATAATAACAGTCAATCAGTACTTAGAAGGAAGCCTATCCTCCAACCTCATCTATCCTCTACTTCAGTCATGGTGGTAGCTCAAATGGTACAGAA
CGACTATGAACCCGGAAAGGGATAAGGGTTGTCATTGCAAGTAAATTTGTGAATCCTATCAATCCAATGGGTAATCAAGAGACATTCAGTTTGGGTTTTA
ATCAAGCTATATTTGATAGAAAATAAGCAAAAGATCATAAAAGAAAATTTTGGAATCTATCGAAGTCGATCCCCCATATTAGTCAATTTCTTCATTAAAT
CTCGAGGTGAACCGAGTCTAGACTTATCTATCCAAAATGATGTGGATAAAATGTGTCAATTTATTAAGAAAATATTTTTAAGGTAAACCATGAATCAGAT
GGGTGAGGGCACCAGTCATATGGATGTGTTGCTTATTGATCTGCTTTCCAACTCAACCACCAAAAACCAGTCCTCGCCCTAAAGGAAGGAGTCCTCTAAT
TTTAATTTGCTATTTTTTTATTTTGGTTATTGGAATATTCGCACGGATAAAAATCAAAAT
>LE_HBa0016M20_SP6_79334 (trimmed for quality and cloning vector)
TTTATCTAATTGTTACAATTGGACCTGTGGAGTTTGGAATCAATTTTCAAGTTATAGACATGGACACTTCTTACAATCTACTTTTTGGTAGGTCATGGAT
ACACCTTGCTAGAGTTGTGCCATCTACTCTACACCAATTCGTCAAGTTTGAACATGGCAAACAAGAAATCATTTTCCATGGTGAAGATGATCTCCAAATA
ACCCGAGATCCTTCAATACCATCCATTGAGTCCAAAAGAGGTTGTGAATCCCTTAATTATAATACTTTGGAAATAATAACAGTCAATCAGTACTTAGAAG
GAAGCCTATCCTCCAACCTCATCTATCCTCTACTTCAGTCATGGTGGTAGCTCAAATGGTACAGAACGACTATGAACCCGGAAAGGGATAAGGGTTGTCA
TTGCAAGTAAATTTGTGAATCCTATCAATCCAATGGGTAATCAAGAGACATTCAGTTTGGGTTTTAATCAAGCTATATTTGATAGAAAATAAGCAAAAGA
TCATAAAAGAAAATTTTGGAATCTATCGAAGTCGATCCCCCATATTAGTCAATTTCTTCATTAAATCTCGAGGTGAACCGAGTCTAGACTTATCTATCCA
AAATGATGTGGATAAAATGTGTCAATTTATTAAGAAAATATTTTTAAGGTAAACCATGAATCAGATGGGTGAGGGCACCAGTCATATGGATGTGTTGCTT
ATTGATCTGCTTTCCAACTCAACCACCA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.962727
Expected error %
0.0539244
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39963.1| Score 114 E Value 8e-30 Identity 28.00% Align. Length 697bp (95.74%) Frame 1
putative polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU90285.1| Score 113 E Value 6e-24 Identity 16.20% Align. Length 326bp (44.78%) Frame 1
putative gag/pol polyprotein, 3'-partial [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0016M20
Clone
Clone name
hba-16m20
LE_HBa0016M20
P016M20
Clone type
BAC
Contamination
none
Estimated length
128,823
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found