Clone Read LE_HBa0016E01_SP6_78912

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0016E01_SP6_78912
Primer
SP6
ID from Seq. Facility
LE_HBa_016_E01-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
3 trimmed for vector and quality, 1243 raw
Sequence
>LE_HBa0016E01_SP6_78912 (raw untrimmed)
AGCACAGCTGCAGAGAGAACCGAGGCGCCGCGCAGCNGGCTGCCGCGAGTGCTCATCTTCTAAGGAGAGACGCGCCCTCGCTCTCNATCNNCTCTCTCTT
CTCTTCTCNGGTCCGATAACTTATTACACACTCCTTCCNTCTATCCTCCACATCACCANTATATCATCNATATCCCNTGGGAGGAGGACTCACACATTAC
TAGCTGCGTTGCGTAGAGAAGAATAAACATTAAGACGAGCTAAACTACAGTAACGATNCACACNCATTATCACACAATCACACGAACATGTCTACGACGC
TGTCATAGACCTCGCNATGGGATATNCACTAACCAAGGATATCACCTCATTTGAGCATGACTGTCNCTCACTGTTCATGCTCGACNCCTCACAATAGCTG
TGCGCGCAAGAACGCGTGCATACCGGGGAGGCGTCGAGAACGAAGACAGAAACACACTCGAGCATGGCAAGTACGACGGTAGATAGGCGAGCCGTGGATG
CGCGGACGCGCGTAACGGTGTGCNGTGCGCATAATAGCAGGACGCCGATCTCTGTCANCACGCGCGTAAGCGGCTCGACGACTGAGCCTGTCGGCCACCA
GTGCAAGGCTTTATATGCAATACGGAACAAGTTGTGTCTTGACACCATGAAACAGCAGCTGACAGATATCGTCGCATATCTCACCGCCTGCACNGGAGAC
GAGCTGTCGGCTCTCTAGATCTATGCNCTCTCTATCCTNGCCGTGGCGCTCGCTGCTGAGAGCACTGCGACACANCNGAGACACAGCTTCGCACGAGACG
ACCCAGCGAGACGCACGTACTGACNTCGTGCTCGCACGTNAGACCACGATCTATCGCCGCTGTGCTGCTCTCGNGCACTCTGTACGTCGTGTGCGTGCTC
GATGGCGCCCNTGACTGTGATCGCTGGCNTGCTGTGTGACTGTGTGTACACTATATGATGNGATTCNAGACACATGTTGCTCGCGTTGCGGTCGCCNTAN
ACGAGNTATACATCGTGGTGAGTAGGCTGCGTACATGTCTNGTNGACAACGTNGCGGTAGACGNACAGATCTCGACGTGCGACGTGCAGCTGCGTGTGTC
GATGTTGTCTGTTCGCGCGCTATCTTGTCTCTCAGCATATCGGACGTCTTCGACTATAATACTAATATATTATCAAACGACTCCTGATGCTATATGCATG
ATGTGTGCTCAANCGATACCACCAGCNATATCACCAGTCAACC
>LE_HBa0016E01_SP6_78912 (trimmed for quality and cloning vector)
ATG

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
 Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
1.70441
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0016E01
Clone
Clone name
hba-16e1
LE_HBa0016E01
P016E01
Clone type
BAC
Contamination
none
Estimated length
141,861
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found