Clone Read LE_HBa0166L14_SP6_78506

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0166L14_SP6_78506
Primer
SP6
ID from Seq. Facility
LE_HBa_166_L14-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
608 trimmed for vector and quality, 812 raw
Sequence
>LE_HBa0166L14_SP6_78506 (raw untrimmed)
GATTGGTCCAAGGTAATTAGGTCCATTTGAAGTTCTGAAGCGCATGGGGGGAGGTATCTTATGAATTAGCCCCGCTTCCAGGACTGTCAGGAGTGCACCC
GGTATTTCATGTGTCTATGTTGAAAAGATACCATGGGGATGGAAACTACATCATTTGTTGGGATTCAGTTCTTCTTGATGAGAATTTGTCTTATGAGGAG
GAGCCTGTTGCTATCTTAGATAGGGAAGTTCGCAAGTTGAGGTCAAGGGAGATTGTATCCATCAAGGTTCAATGGAAGAATCGGCCAGTTGAAGAGTCCA
CTTGGGAGAAGGAGGCCGATATGCAAGAAAAATACCCACACCTGTTTACAGATTCAGGTACTCCTTTTCTCCCTTGTTTTTCTTCTTGTGATCGTTCGGG
GATGAACGATGGGTAAATTGGTATCTATTGTAATGACATGTTAGTCGTTTGGAGCAGTAGAGTTTATTTCTGGTAATAACTGTCTGGGTCGACGGATCCC
ACGATGGACCGTCATGGGCACGACGGACCATCGAGGGGGTGTCGTTCAAAAACACTTAGATTCTGGAAATTTGGGTACTGAGAACAACTCTCTGAACTTT
GCGACGACATGGCAGGACGGACCGTCTTGGGCACGAAGGACCGTCACAGACTCTTTAATGTAATTGAGTTTCTGAACTTTGTGACTACTCTTCTTGGATG
GACCGTCTCAGGTACGTACGGACCGTCACAAACTGCGTAACCTCTGACTGGGTTTGGTTTTTCGTTAAAAGTTTTTATAGTGCGGTCTTGTCACTTTTCT
TTCTTATTATTA
>LE_HBa0166L14_SP6_78506 (trimmed for quality and cloning vector)
TTGAAGTTCTGAAGCGCATGGGGGGAGGTATCTTATGAATTAGCCCCGCTTCCAGGACTGTCAGGAGTGCACCCGGTATTTCATGTGTCTATGTTGAAAA
GATACCATGGGGATGGAAACTACATCATTTGTTGGGATTCAGTTCTTCTTGATGAGAATTTGTCTTATGAGGAGGAGCCTGTTGCTATCTTAGATAGGGA
AGTTCGCAAGTTGAGGTCAAGGGAGATTGTATCCATCAAGGTTCAATGGAAGAATCGGCCAGTTGAAGAGTCCACTTGGGAGAAGGAGGCCGATATGCAA
GAAAAATACCCACACCTGTTTACAGATTCAGGTACTCCTTTTCTCCCTTGTTTTTCTTCTTGTGATCGTTCGGGGATGAACGATGGGTAAATTGGTATCT
ATTGTAATGACATGTTAGTCGTTTGGAGCAGTAGAGTTTATTTCTGGTAATAACTGTCTGGGTCGACGGATCCCACGATGGACCGTCATGGGCACGACGG
ACCATCGAGGGGGTGTCGTTCAAAAACACTTAGATTCTGGAAATTTGGGTACTGAGAACAACTCTCTGAACTTTGCGACGACATGGCAGGACGGACCGTC
TTGGGCAC

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.977358
Expected error %
0.443923
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 130 E Value 2e-29 Identity 19.40% Align. Length 314bp (51.64%) Frame 2
putative polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38742.1| Score 124 E Value 1e-27 Identity 22.20% Align. Length 260bp (42.76%) Frame 2
hypothetical protein PGEC093P17.31 [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0166L14
Clone
Clone name
hba-166l14
LE_HBa0166L14
P166L14
Clone type
BAC
Contamination
none
Estimated length
71,597
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found