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Clone Read LE_HBa0164O01_SP6_77856

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0164O01_SP6_77856
Primer
SP6
ID from Seq. Facility
LE_HBa_164_O01-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
430 trimmed for vector and quality, 697 raw
Genbank Accession
DU067452
Sequence
>LE_HBa0164O01_SP6_77856 (raw untrimmed)
GGTTCATCCTGCTCACGATTTTCCTTTACATGAATCTCTTAATTTCTTGAATGTTTATTTGGCTCAACCATCTTCAGAATTGCATTTATTTTTGCTTGAT
CAATTTTGATTACTCTATGTTGTACAATGAAGCCAAGCAAGTTTCCAGAGGTAACTCCAAATGCACATTTCAAAGGATTCATTCTAAGTTGATACCTTTA
TAGTAGATCAAACACCATTCACATGTCTTGCAAGTGGTCACAGTTTTTTCCTTGATTTTAAAACTAAATCATCAATGTAACATTCAAAATTTTGCGAAGA
ATGTTATCAAAGATGTTTTGCATAGATTTTTGGTATGTTTCTCCTGCGTTTTTTAAATCAAACGGCATTACTTTTTAGCAATGGATGCCCTTAGGAGTGT
GGAATGCGGTCAACTCTTCATCCTTTGGTGACATGCGGATCTGGTTGTAGCCACATGAACCATCCATAAAAGACATTGCCTCTTACCTGGTAGTCGCATC
TATCATAATCTAATGTATAAGAAGCGAAAATTCTTTTTTTGGATATGCATTATTGAGATCTCTAAGTCAATGCAAACTCGAATTTGCCCATTATTCTTCC
TCATTGGGAATCATTCTTTGAAACCCATGTGGGGGTACTTAACCTCACGGGAAAATCTAGCTTTTAATATTCTAGTTTAACTTCCATTTTCGATCTC
>LE_HBa0164O01_SP6_77856 (trimmed for quality and cloning vector)
TGGCTCAACCATCTTCAGAATTGCATTTATTTTTGCTTGATCAATTTTGATTACTCTATGTTGTACAATGAAGCCAAGCAAGTTTCCAGAGGTAACTCCA
AATGCACATTTCAAAGGATTCATTCTAAGTTGATACCTTTATAGTAGATCAAACACCATTCACATGTCTTGCAAGTGGTCACAGTTTTTTCCTTGATTTT
AAAACTAAATCATCAATGTAACATTCAAAATTTTGCGAAGAATGTTATCAAAGATGTTTTGCATAGATTTTTGGTATGTTTCTCCTGCGTTTTTTAAATC
AAACGGCATTACTTTTTAGCAATGGATGCCCTTAGGAGTGTGGAATGCGGTCAACTCTTCATCCTTTGGTGACATGCGGATCTGGTTGTAGCCACATGAA
CCATCCATAAAAGACATTGCCTCTTACCTG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.933424
Expected error %
0.362593
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAQ82037.1| Score 132 E Value 2e-30 Identity 16.40% Align. Length 413bp (96.05%) Frame 2
gag/pol polyprotein [Pisum sativum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAQ82033.1| Score 128 E Value 4e-29 Identity 16.20% Align. Length 413bp (96.05%) Frame 2
gag/pol polyprotein [Pisum sativum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0164O01
Clone
Clone name
hba-164o1
LE_HBa0164O01
P164O01
Clone type
BAC
Contamination
none
Estimated length
76,173
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found