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Clone Read LE_HBa0034K05_T7_7785

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0034K05_T7_7785
Primer
T7
ID from Seq. Facility
LE_HBa_034_K05-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
680 trimmed for vector and quality, 869 raw
Genbank Accession
DU027078
Sequence
>LE_HBa0034K05_T7_7785 (raw untrimmed)
AACCGGGTCCCGGGGGAATCTCTAGAGTCGACCTGCAGGCATGCAAGCTTATGTAATGTTACTTTCAAGTATGCAAAAAAGAGATAAAAATATGAAGCAG
GTAAAAATAAAGTCATATTCTCTCTCTCTCTATTATGAGTGTAGTGTATTTGGGTTCTGACTGATATAATGGGTCATGCATGCATGGGTCAATCACTTCC
TTCCAAATATTTCCAACTTTATTTATCATTTGATTTCCATTCTTATTCCCTATTACTAGTCATTTCAAGTAACCCTAATTACTTAACACTTTCCCTATAT
ATAAAGAACTATTTAGCTATTACTTCTTCTACATAATAAGACATGGAGACAAAAAGTACTGAAAATTGTAAAGATGAGGAGCAAAAAAATCACTACTACT
ACTCTAATTCTACATCACCAGGACTATTAAGCTCTCTTGAAGATGAAGAAATTAAGAGGAAAATATGTTGTCACTCTTTGTATGGTCTTTTGGTTCAAAC
TCACTTGGATTGTTTGAAGGTATTTTCCTCAATTACACTCATCAACAAATTAGGGTTCCTTAATTTTTAGGTTACTCAATTAGTAAAGTAAAGTCGTGTA
GTGTCTTTCCGAGATAATATCTGTTAGTTGAATAAAGAAGTTCGATATTGATTAATTACTTAATTAGCAGGGTTGTTTGGGGATTTACTGAGATTTGACA
AATTGATCAAAAAACCCAACAAAATCAGCAAAATGTAAAAAGTTATCTCCCCCCCATGGATCATCAAACAGAATTGAACAAAAATTTCGCTTACTCCCAT
TGGATCACCCAGCTTAAACTGGACAACTTCATTGTACCAATTAATTTTTTTTCCTCTTCTTTCTTTCGA
>LE_HBa0034K05_T7_7785 (trimmed for quality and cloning vector)
AGCTTATGTAATGTTACTTTCAAGTATGCAAAAAAGAGATAAAAATATGAAGCAGGTAAAAATAAAGTCATATTCTCTCTCTCTCTATTATGAGTGTAGT
GTATTTGGGTTCTGACTGATATAATGGGTCATGCATGCATGGGTCAATCACTTCCTTCCAAATATTTCCAACTTTATTTATCATTTGATTTCCATTCTTA
TTCCCTATTACTAGTCATTTCAAGTAACCCTAATTACTTAACACTTTCCCTATATATAAAGAACTATTTAGCTATTACTTCTTCTACATAATAAGACATG
GAGACAAAAAGTACTGAAAATTGTAAAGATGAGGAGCAAAAAAATCACTACTACTACTCTAATTCTACATCACCAGGACTATTAAGCTCTCTTGAAGATG
AAGAAATTAAGAGGAAAATATGTTGTCACTCTTTGTATGGTCTTTTGGTTCAAACTCACTTGGATTGTTTGAAGGTATTTTCCTCAATTACACTCATCAA
CAAATTAGGGTTCCTTAATTTTTAGGTTACTCAATTAGTAAAGTAAAGTCGTGTAGTGTCTTTCCGAGATAATATCTGTTAGTTGAATAAAGAAGTTCGA
TATTGATTAATTACTTAATTAGCAGGGTTGTTTGGGGATTTACTGAGATTTGACAAATTGATCAAAAAACCCAACAAAAT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.929056
Expected error %
0.502911
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAP47028.1| Score 129 E Value 9e-29 Identity 30.30% Align. Length 200bp (29.41%) Frame 2
knox-like homeodomain protein 1 [Lycopersicon esculentum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0034K05
Clone
Clone name
hba-34k5
LE_HBa0034K05
P034K05
Clone type
BAC
Contamination
none
Estimated length
122,542
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found