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Clone Read LE_HBa0160L02_SP6_76946

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0160L02_SP6_76946
Primer
SP6
ID from Seq. Facility
LE_HBa_160_L02-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
667 trimmed for vector and quality, 899 raw
Sequence
>LE_HBa0160L02_SP6_76946 (raw untrimmed)
GGGAGCGTAGTGTCAGCGGCGCAAGTAGGCAAAAAGAATATGCAGATCAAAAGGTTAGAAACTTAGAGTTCATGGAGGCTGTACAAGTCTTGTTGAAAGT
TTCGAATGAAAGGGGTGATGCGGTTTGGTAAAAGAGATAAACTTAGCCCAAGGTATATTGGTCCGTTTGAAGTACTTAAGTGAGTAGGGGAGGTGGCCTA
TGAGTTAGCCTTGCCTCCAGGGCTGTCCGGAGTGCATCCGGTGTTTCATGTGTCTATGTTGAAAAGATACCATGGGGTTAGAAACTACATTATCCGTTGG
GATTCAGTCTTGCTTGATGAGAACTTGTCTTATGAGGAGGAACCTGTGGCCATTCTAGATAGAGAAATTCGCAAGTTGAGATCAAGGGAGGCAGATATGC
GAGAAAGATACCCACATCTGTTTACAGATTCAGGTACTCCTTTTCGCCCTTGTTTTCCTTCTTGTGATCGTACGGGGACGAACGATGGGTAAATTGGTAT
CTATTGTAACGACCTGTTTAGTCGTTTTGAACAGCAGATTTTATTTCTGGAAAAACAGGCTGAGGCGACGGACCGTCACAGGGTCTCGTTTCAAAACACT
TAGAAAATCTGAAATTGGGTACTGAAAATCGACTCTCTGAACTTCGTGACGGAATGGCAGGACGGACCGTCACAAGTGTGACGGACCGTCACAGACTCTT
CAGAGAAATTGAGTTCCTGAACTCTGTGACGGGCAGCAGGACGGAATGTCGCAGGCGCGACGGACCGTCACAAACTGCGAAATCCCAATCTGGGGCGGAA
TTTCTTTAAACGTTTTAAGGGGAGTTTTTGACTATTCCCTACTTAATTATAAAGTTAGAGGGGTTAATTTAATAAATCTAATTCCTGGGGGGGTTAAAG
>LE_HBa0160L02_SP6_76946 (trimmed for quality and cloning vector)
AAGTAGGCAAAAAGAATATGCAGATCAAAAGGTTAGAAACTTAGAGTTCATGGAGGCTGTACAAGTCTTGTTGAAAGTTTCGAATGAAAGGGGTGATGCG
GTTTGGTAAAAGAGATAAACTTAGCCCAAGGTATATTGGTCCGTTTGAAGTACTTAAGTGAGTAGGGGAGGTGGCCTATGAGTTAGCCTTGCCTCCAGGG
CTGTCCGGAGTGCATCCGGTGTTTCATGTGTCTATGTTGAAAAGATACCATGGGGTTAGAAACTACATTATCCGTTGGGATTCAGTCTTGCTTGATGAGA
ACTTGTCTTATGAGGAGGAACCTGTGGCCATTCTAGATAGAGAAATTCGCAAGTTGAGATCAAGGGAGGCAGATATGCGAGAAAGATACCCACATCTGTT
TACAGATTCAGGTACTCCTTTTCGCCCTTGTTTTCCTTCTTGTGATCGTACGGGGACGAACGATGGGTAAATTGGTATCTATTGTAACGACCTGTTTAGT
CGTTTTGAACAGCAGATTTTATTTCTGGAAAAACAGGCTGAGGCGACGGACCGTCACAGGGTCTCGTTTCAAAACACTTAGAAAATCTGAAATTGGGTAC
TGAAAATCGACTCTCTGAACTTCGTGACGGAATGGCAGGACGGACCGTCACAAGTGTGACGGACCGT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.973899
Expected error %
0.204585
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT66771.1| Score 142 E Value 6e-33 Identity 21.90% Align. Length 332bp (49.78%) Frame 1
putative polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAV31169.1| Score 142 E Value 7e-33 Identity 21.90% Align. Length 332bp (49.78%) Frame 1
putative polyprotein [Solanum tuberosum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0160L02
Clone
Clone name
hba-160l2
LE_HBa0160L02
P160L02
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found