Clone Read LE_HBa0160K01_T7_76897

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0160K01_T7_76897
Primer
T7
ID from Seq. Facility
LE_HBa_160_K01-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
757 trimmed for vector and quality, 856 raw
Sequence
>LE_HBa0160K01_T7_76897 (raw untrimmed)
CCTTAACTGGGTCCCGGGGGGTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTACTCATGTCTGTTTTTACCGCTGCATAACCCACTTTGCCTTGTGT
TTTCCTCTTTAGATCATGCATAGCTTCAAAGGAAATCATTGCATTATCTGTAATGTATCTTCCTGGAATGAATGCACTTTGGGCCTCAGAGATTATTAGA
TTCATACATCGTTTCATTCTGTTCGCAAGGACTTTACAAGTGATTCTATCAACAACATTGCATAGGGAGATAGGCCGTAAATCTGAAACAAATTCAGGTT
GTTTCTTTTTTGGGATTAGCACAATATTAGTATTGTTACTTCCTGGCGCAGGTGAATTGTTATTCAAACATTCCATAATGGCCTTAGAAACATCATCTCC
TACCGTACTCCAGAAATGTCGAAAGAACCTGGATTTAATCCATCAGGTCCGGGAGCTTTATCCGGGTTCATGCTAAAAACAACATGTTTGATCTCTTCAA
CTGTAACAGGGCGCTTCAAATCCTCATTAATTTCATCAGAAACAATCCTATCAACAATGTCAATAATGACACTAGATGGACCCTGTTGTGTCTTGAACAA
ATTGTTGTAATAGTTTACAATAAGGTCACTCAATCCATTCTTCCAATTAAAACTTCCTGACTCATCTTTCAATTGTGATATTGTATTCTTTTTCCGTCTT
GAGGTGGCCATAAGATGAAAATAACGAGTATTTTGATCACCTCTTTGCAGCCATAATTGTTTTGATCTCTGTTTCCAATAATTTTCTTGTTGGTTCAATA
AGATTTCTTAAAAATCTGGCACTATTAAAAAGAGCAACACGAGTCAAATCTCTACT
>LE_HBa0160K01_T7_76897 (trimmed for quality and cloning vector)
AGCTTTACTCATGTCTGTTTTTACCGCTGCATAACCCACTTTGCCTTGTGTTTTCCTCTTTAGATCATGCATAGCTTCAAAGGAAATCATTGCATTATCT
GTAATGTATCTTCCTGGAATGAATGCACTTTGGGCCTCAGAGATTATTAGATTCATACATCGTTTCATTCTGTTCGCAAGGACTTTACAAGTGATTCTAT
CAACAACATTGCATAGGGAGATAGGCCGTAAATCTGAAACAAATTCAGGTTGTTTCTTTTTTGGGATTAGCACAATATTAGTATTGTTACTTCCTGGCGC
AGGTGAATTGTTATTCAAACATTCCATAATGGCCTTAGAAACATCATCTCCTACCGTACTCCAGAAATGTCGAAAGAACCTGGATTTAATCCATCAGGTC
CGGGAGCTTTATCCGGGTTCATGCTAAAAACAACATGTTTGATCTCTTCAACTGTAACAGGGCGCTTCAAATCCTCATTAATTTCATCAGAAACAATCCT
ATCAACAATGTCAATAATGACACTAGATGGACCCTGTTGTGTCTTGAACAAATTGTTGTAATAGTTTACAATAAGGTCACTCAATCCATTCTTCCAATTA
AAACTTCCTGACTCATCTTTCAATTGTGATATTGTATTCTTTTTCCGTCTTGAGGTGGCCATAAGATGAAAATAACGAGTATTTTGATCACCTCTTTGCA
GCCATAATTGTTTTGATCTCTGTTTCCAATAATTTTCTTGTTGGTTCAATAAGATTT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.955453
Expected error %
0.446718
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g43760.1 Score 54 E Value 6e-13 Identity 30.30% Align. Length 544bp (71.86%) Frame 2
68414.m05034 hypothetical protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAX95232.1| Score 127 E Value 4e-44 Identity 50.80% Align. Length 751bp (99.21%) Frame 2
retrotransposon protein, putative, unclassified [Oryza sativa (japonica cultivar-group)] gb|AAX95129.1| retrotransposon protein, putative, unclassified [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAD24831.1| Score 119 E Value 6e-41 Identity 45.40% Align. Length 745bp (98.41%) Frame 2
putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] pir||G84721 hypothetical protein At2g31520 [imported] - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0160K01
Clone
Clone name
hba-160k1
LE_HBa0160K01
P160K01
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found