Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

Clone Read LE_HBa0157K18_T7_76163

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0157K18_T7_76163
Primer
T7
ID from Seq. Facility
LE_HBa_157_K18-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
660 trimmed for vector and quality, 788 raw
Genbank Accession
DU063265
Sequence
>LE_HBa0157K18_T7_76163 (raw untrimmed)
GCTGGGACCCGGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGTGAAATGGAAGTGGAAACTGCATTAAAAGGTGTTAATGAGCACAAAGAAC
TGGTAAGTATGCCCGTTCAGTCGAGCTACCTATACATTGTCACAACTCACAAAGGAAAGAAAGAAGAAAAAACGACTACTCCACCAAATTGTTGCTACAT
GTAACATCCAAACTAGTAAAAACAATTTCTAACTTGTGACAGGTCAATATTCTGAAACAAGAATTAGAAAAGACCAGAACTGCTTTACATATTTCAAATT
GCAAGTTGCAGCTGAAAGATGAGATAGAGGCGGCAGCCATTGCTGCCCGAGAGGCAGCTGAGAGATCTCTCCAGCTTGCAGACAGCAGGGCTACTGAACT
ACGTAAGCAGATTGAGGAGCTAAGAAGACAATTAGAAGCCGCAGAGAAAAAGGAACGAATAAATCGTCGTAGACCACGGCATGTATGTTGGCCAATGCGA
GCTCTCAAGTTCTGCCCTGCTACTAATACAACTGGTATTAGAAATGTTACACAAATGCTACCATTTTGAACTTTTAGCCTTTATTTATGTTGTTCACGAG
TTTCTGCTACGGTTGAATAGATCTTGTTTCTTCATACGGTTGTTTCATTAGATAACTCCACTAGAGATAAATACATAGATATATAAAGATAACAAAGTTC
TTCATAATTGAATACATAATGGAGCATAAGTAAGACAACTTGAAACATTTAAATATATCAAAATGTATATATTTAAATACATTAACAA
>LE_HBa0157K18_T7_76163 (trimmed for quality and cloning vector)
AGCTTGTGAAATGGAAGTGGAAACTGCATTAAAAGGTGTTAATGAGCACAAAGAACTGGTAAGTATGCCCGTTCAGTCGAGCTACCTATACATTGTCACA
ACTCACAAAGGAAAGAAAGAAGAAAAAACGACTACTCCACCAAATTGTTGCTACATGTAACATCCAAACTAGTAAAAACAATTTCTAACTTGTGACAGGT
CAATATTCTGAAACAAGAATTAGAAAAGACCAGAACTGCTTTACATATTTCAAATTGCAAGTTGCAGCTGAAAGATGAGATAGAGGCGGCAGCCATTGCT
GCCCGAGAGGCAGCTGAGAGATCTCTCCAGCTTGCAGACAGCAGGGCTACTGAACTACGTAAGCAGATTGAGGAGCTAAGAAGACAATTAGAAGCCGCAG
AGAAAAAGGAACGAATAAATCGTCGTAGACCACGGCATGTATGTTGGCCAATGCGAGCTCTCAAGTTCTGCCCTGCTACTAATACAACTGGTATTAGAAA
TGTTACACAAATGCTACCATTTTGAACTTTTAGCCTTTATTTATGTTGTTCACGAGTTTCTGCTACGGTTGAATAGATCTTGTTTCTTCATACGGTTGTT
TCATTAGATAACTCCACTAGAGATAAATACATAGATATATAAAGATAACAAAGTTCTTCA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.963204
Expected error %
0.895955
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g24560.1 Score 65 E Value 4e-11 Identity 12.70% Align. Length 266bp (40.30%) Frame 2
68414.m03090 expressed protein
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0157K18
Clone
Clone name
hba-157k18
LE_HBa0157K18
C03HBa0157K18
P157K18
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found