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Clone Read LE_HBa0157A18_T7_75683

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0157A18_T7_75683
Primer
T7
ID from Seq. Facility
LE_HBa_157_A18-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
486 trimmed for vector and quality, 833 raw
Genbank Accession
DU062932
Sequence
>LE_HBa0157A18_T7_75683 (raw untrimmed)
GCTGGGACCCGGGGGGTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGAAAATTAATTAAATTGTGGACGATTAGAGGTGAGTCTCAACAGAAGATAC
AAAAATCCTTGCCCTTAAAGAGTATTTAATCTGCTGTTATCAGTTCATTGCATCTGGAAGCCGAAAAATTGGTAGTAACCGATGCATACCTTCGTTACTT
AGATGGATTACTTGAAGAAAAAGATGGAGGACCTGCGTGGATTCAGATGATGGATCGTTCTACTCCAAATATGTCCTATCAGGCTTGGCGTATAGATCCC
GAGGTAGCTTTCTCTCCCCTGGCCTTATAGTATGTGTAATGATAGGAGGGATTTAATTACTTTGCACTTTCCTTGAATTGGATTTTATTTTAATGTCATG
CTATACGGGACCTCTACTATATCTTATTATAAATGGATATGAGGATGCCACTCCATAAATGTTGAGGGATTTCTTCTGGGAAGAGGTATTTCAATTGAAG
TGGGATGACATGCTATGACATGCTGAAACATGAGAAGAGGGTCCTACCACCTGAACTGTGGTGTTTAGGTGGGTAGAGTATGGTTTTTTAATTTTTCTGT
CTCCACTTATGTTTTGACTTGGTCATACTAATTCACTTTAAATTGAATCATTTATTCTCGCACCTGTTCATTAGCATTTCCATTTACAGAATAGAATGGG
TATATACAGATTTTTTTTGGTTATTATTGTACTTGAGTTCCACTTTTTGTCCATAATTATACTTATTTTTAAGATTTTAATCATGTCTCTTTTTTTTATT
CTTGCGGTTTGCTTTTTGTTTATACTATTAATT
>LE_HBa0157A18_T7_75683 (trimmed for quality and cloning vector)
AGCTTGAAAATTAATTAAATTGTGGACGATTAGAGGTGAGTCTCAACAGAAGATACAAAAATCCTTGCCCTTAAAGAGTATTTAATCTGCTGTTATCAGT
TCATTGCATCTGGAAGCCGAAAAATTGGTAGTAACCGATGCATACCTTCGTTACTTAGATGGATTACTTGAAGAAAAAGATGGAGGACCTGCGTGGATTC
AGATGATGGATCGTTCTACTCCAAATATGTCCTATCAGGCTTGGCGTATAGATCCCGAGGTAGCTTTCTCTCCCCTGGCCTTATAGTATGTGTAATGATA
GGAGGGATTTAATTACTTTGCACTTTCCTTGAATTGGATTTTATTTTAATGTCATGCTATACGGGACCTCTACTATATCTTATTATAAATGGATATGAGG
ATGCCACTCCATAAATGTTGAGGGATTTCTTCTGGGAAGAGGTATTTCAATTGAAGTGGGATGACATGCTATGACATGCTGAAACA

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.950314
Expected error %
3.45804
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At1g64720.1 Score 67 E Value 5e-21 Identity 57.10% Align. Length 415bp (85.39%) Frame 3
68414.m07338 expressed protein weak similarity to SP|P53809 Phosphatidylcholine transfer protein (PC-TP) {Rattus norvegicus}
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g54170.1 Score 59 E Value 3e-17 Identity 53.60% Align. Length 394bp (81.07%) Frame 3
68418.m06745 expressed protein weak similarity to SP|Q9UKL6 Phosphatidylcholine transfer protein (PC-TP) {Homo sapiens}
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAD28760.1| Score 67 E Value 2e-19 Identity 57.10% Align. Length 415bp (85.39%) Frame 3
membrane related protein CP5 [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAN15331.1| Score 67 E Value 2e-19 Identity 57.10% Align. Length 415bp (85.39%) Frame 3
membrane related protein CP5, putative [Arabidopsis thaliana] gb|AAM91533.1| membrane related protein CP5, putative [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0157A18
Clone
Clone name
hba-157a18
LE_HBa0157A18
C08HBa0157A18
P157A18
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found