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Clone Read LE_HBa0153I14_SP6_74522

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0153I14_SP6_74522
Primer
SP6
ID from Seq. Facility
LE_HBa_153_I14-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
473 trimmed for vector and quality, 952 raw
Genbank Accession
DU066662
Sequence
>LE_HBa0153I14_SP6_74522 (raw untrimmed)
GGCGGAGGAATTGGGGGGGGGGAACGTGGTTATTCAACAAGCTGTTGACGAATATAGTGATACAAATTGAATTACTGGTTCAACTGAAACTAAGTCCACA
AGTGGATATGTTTTTACCATTGGCATAAGATCAATTTCTTTAAAATAATTCAATAAAAAATGTATAGAACACTCTACAATGGAGTTGAGTTTATAGTCAT
AGACAAGGCCGATGAAGAAACATAATGAATCCAAAATTTCTTAGAAGAAATTCTATTTTGGCACAAATCAATGATTCCTATATTCGTACATTGTGATAGT
CAAGTTGTAATAGGAAGGGTTGGGAGAGTTATATTTAACGGTTAGTCTCATCACAAATGACGAAGACAGAATACCTTTAGGCAACTACTCTCAAGTGAAA
TCATCACAATTTACTATGAAAAGTTAAGGAAAACCTACTTATCCAAATGCATGCAATCCTTACTTATGAATTACATAATTTTTCATGCATATGTTTTAAC
AATAATCATTTTCATTCGTGTAGGGTGGGATGGAGGGGGAACCTCAACACACTCTCCACCCCGGTGAACCCCTATGCCCTCTTCGCTCAAGTCTTGAAAC
TACAACATTTCTACAACCACAATTTAAATTAATTCACTATAAATATAAATCAAAAAACATGTATTTTCCTTCTCCCTCCCTATTACCTCTCTTCCTTTCC
CCCTTCCCTCGCATACACTACTAATTCCAACCACCTCCATTCATATACCTAACAACATCCCCTGTCATACTAAACCTATCTACATATTTTCTCTACATAT
AAACTAATGATAGCAGCACAAGCAATACCATACGACTAACCGGCCCCCCTTGACTCAACCTCCATACCCCCTACGACGCCGTACACCACCCTACTCGAAT
TAACCACTATGATTCCAACGATCAAACACCTCCATACACCAAAAGAGATAGC
>LE_HBa0153I14_SP6_74522 (trimmed for quality and cloning vector)
CGAATATAGTGATACAAATTGAATTACTGGTTCAACTGAAACTAAGTCCACAAGTGGATATGTTTTTACCATTGGCATAAGATCAATTTCTTTAAAATAA
TTCAATAAAAAATGTATAGAACACTCTACAATGGAGTTGAGTTTATAGTCATAGACAAGGCCGATGAAGAAACATAATGAATCCAAAATTTCTTAGAAGA
AATTCTATTTTGGCACAAATCAATGATTCCTATATTCGTACATTGTGATAGTCAAGTTGTAATAGGAAGGGTTGGGAGAGTTATATTTAACGGTTAGTCT
CATCACAAATGACGAAGACAGAATACCTTTAGGCAACTACTCTCAAGTGAAATCATCACAATTTACTATGAAAAGTTAAGGAAAACCTACTTATCCAAAT
GCATGCAATCCTTACTTATGAATTACATAATTTTTCATGCATATGTTTTAACAATAATCATTTTCATTCGTGT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.938367
Expected error %
0.0337078
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89783.1| Score 94 E Value 7e-30 Identity 60.80% Align. Length 370bp (78.22%) Frame 3
putative retrovirus-related pol polyprotein-like [Solanum tuberosum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38766.1| Score 87 E Value 2e-26 Identity 58.20% Align. Length 370bp (78.22%) Frame 3
putative polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0153I14
Clone
Clone name
hba-153i14
LE_HBa0153I14
P153I14
Clone type
BAC
Contamination
none
Estimated length
74,369
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found