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Clone Read LE_HBa0153B11_SP6_74180

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0153B11_SP6_74180
Primer
SP6
ID from Seq. Facility
LE_HBa_153_B11-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
668 trimmed for vector and quality, 935 raw
Genbank Accession
DU066398
Sequence
>LE_HBa0153B11_SP6_74180 (raw untrimmed)
CACCCGGGGATTAGGGGGTGTAGGTCAAGGCTCGACCGCAGAGGTCTATAGTGTCTATGGAGACAACTTTACGTTGCTCCAAGGCTCCCTTCAACTGATA
AAAAATGAAAAATCATTTCTCATGACTGCATTATTCATCTATTATTGACTTAGTTGCTTAATTATGTTGTTTTAACGATCATTCTATCTGTCGTAATCAG
TTTTTCAGGAACTCATCTTGCTTGTGGCAATAGATTTCAGAAACCCTGTGTTTCTAGTTCCTCGGCTCCAGGTTAATAGTCTTGTCACAAATGCACCTTT
TAGTAGTTCTTAGCCAACAAATGATAATTGTTTAAGTGATACTCTTTTCAACAGCTTCTAGCAGAAGACCAAAACTTGAGGTTGCTATTACTGGTGCAAG
TTGTGGTGCATTTCTTCTTCTCTTAGTTGGGGCTATCATCACATATCGATGCAATTATAAACGTAAAATCAAACAAGATCAATTTTTTGATGTGGAAGGT
ATATGCTTTACTCCTATTTTTTCAACAGAAAGAGTATATAGATTTTCCTGTACTGAACAAATTCCTTAATAACTTCAAATGCCATATACTTTTATGGCAT
TTTAGGTGACGTTGAGCGCAACATTTCATTAGGCCAACTAAGAAGGTTCTCATGGCGCGAACTTCAGATTGCAACGGACAATTTCAGTGAAAGCAACATT
ATAGGACAAGGAGGTTTTGGTAAAGTTTACCAAGGGCTATCTTTCAGACAATACAAAAGTGGCAGTGAATAGACTCACTGATTACCATAATCCTGGTGGA
GAGGCTGCATTCCTAAGGGAAGTGGAGCTGAATAGTGTTGAATTTCACCGGAATCTCTTACTTTTGATTGGGTTCCGTACAACCCCTCCGAAAAAATTCT
GGTTAACCAATTAGGGGAACTCTTGTGTGCGAATC
>LE_HBa0153B11_SP6_74180 (trimmed for quality and cloning vector)
GTCTATAGTGTCTATGGAGACAACTTTACGTTGCTCCAAGGCTCCCTTCAACTGATAAAAAATGAAAAATCATTTCTCATGACTGCATTATTCATCTATT
ATTGACTTAGTTGCTTAATTATGTTGTTTTAACGATCATTCTATCTGTCGTAATCAGTTTTTCAGGAACTCATCTTGCTTGTGGCAATAGATTTCAGAAA
CCCTGTGTTTCTAGTTCCTCGGCTCCAGGTTAATAGTCTTGTCACAAATGCACCTTTTAGTAGTTCTTAGCCAACAAATGATAATTGTTTAAGTGATACT
CTTTTCAACAGCTTCTAGCAGAAGACCAAAACTTGAGGTTGCTATTACTGGTGCAAGTTGTGGTGCATTTCTTCTTCTCTTAGTTGGGGCTATCATCACA
TATCGATGCAATTATAAACGTAAAATCAAACAAGATCAATTTTTTGATGTGGAAGGTATATGCTTTACTCCTATTTTTTCAACAGAAAGAGTATATAGAT
TTTCCTGTACTGAACAAATTCCTTAATAACTTCAAATGCCATATACTTTTATGGCATTTTAGGTGACGTTGAGCGCAACATTTCATTAGGCCAACTAAGA
AGGTTCTCATGGCGCGAACTTCAGATTGCAACGGACAATTTCAGTGAAAGCAACATTATAGGACAAGG

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.957113
Expected error %
0.148016
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g63710.1 Score 56 E Value 1e-15 Identity 39.60% Align. Length 507bp (75.90%) Frame 1
68418.m07997 leucine-rich repeat transmembrane protein kinase, putative
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM98289.1| Score 56 E Value 5e-14 Identity 39.60% Align. Length 507bp (75.90%) Frame 1
At5g63710/MBK5_19 [Arabidopsis thaliana] ref|NP_568977.1| leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] gb|AAL31184.1| AT5g63710/MBK5_19 [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAB10464.1| Score 56 E Value 5e-14 Identity 39.60% Align. Length 507bp (75.90%) Frame 1
receptor-like protein kinase [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0153B11
Clone
Clone name
hba-153b11
LE_HBa0153B11
P153B11
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found