Clone Read LE_HBa0152M18_T7_73955

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0152M18_T7_73955
Primer
T7
ID from Seq. Facility
LE_HBa_152_M18-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
831 trimmed for vector and quality, 912 raw
Genbank Accession
DU064466
Sequence
>LE_HBa0152M18_T7_73955 (raw untrimmed)
ATGACTTGGTACCCGGGGTTCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTTCTTCATAGAAGCATCACCCAGCTCATACACAACACTAAGTCCCTGA
GATGCCAGCTCCTGTGTAAGCTCGTTCTGCTCAGCCAGAAGGTGAGAGAATGCTTCCTACAATAGTACAAGAGTCAGTGTCTCAAAAGGCTCTGGTAAAA
TGTTTTCTTCGGAAACATCAAAATAAAAGGAGGTCACTTTGATGTCTATAGATAATTGAAGAAGCATAGGCCTCACAGTTTAGAAAGCACCCAGTGGTTA
GTTATTAAAATTGTATTTATCAGGGGAAGAGAAGTGCTTGAAGCTGTCTCAACGTTGCTCTTCAAAACAAAATTGTGACTATCATAATTGAGACCGACTA
TGAAACAATAAACATGATCTCTAACGGGGATGATTATCATCAAAAATGTAATCGATGACTGCAGATTATACCTGACTAGATTGGGAAACACAACGATTCA
GTGTATCTGCAAAGAAGCTAACCAGTTGGTGGACACACTAGCTAAGCATGGAAGCAAAATCCAAGTTTTTGGTTTACATTTGTACTATGATATACTGCCA
TCTTTTGTATTATTTACTTATGAATCAAATAAGAAATCCTATCCCTAGGAAGGTCAAAGCTTGTAATAGTTTCTATATTTTACTAATAATACATCCCAAT
AATCAAAAGAAATAAAAGGCTGTCCTGGCAGCATATACAAAAGGCTAATAGAGCTGAAAAGCAATAGTTTGAGTACTTCTCCCAGATACAACAACATTAG
GATTAAACCCAAACGAGTTCGAAATTCTTCCCAGGTATGTAGTATAAGGTTTTGCTATGGAACTGTCAGCATCAAGTTAAATTCAAGATACCTGGATGTC
AAGAAACAGTTT
>LE_HBa0152M18_T7_73955 (trimmed for quality and cloning vector)
AGCTTTTCTTCATAGAAGCATCACCCAGCTCATACACAACACTAAGTCCCTGAGATGCCAGCTCCTGTGTAAGCTCGTTCTGCTCAGCCAGAAGGTGAGA
GAATGCTTCCTACAATAGTACAAGAGTCAGTGTCTCAAAAGGCTCTGGTAAAATGTTTTCTTCGGAAACATCAAAATAAAAGGAGGTCACTTTGATGTCT
ATAGATAATTGAAGAAGCATAGGCCTCACAGTTTAGAAAGCACCCAGTGGTTAGTTATTAAAATTGTATTTATCAGGGGAAGAGAAGTGCTTGAAGCTGT
CTCAACGTTGCTCTTCAAAACAAAATTGTGACTATCATAATTGAGACCGACTATGAAACAATAAACATGATCTCTAACGGGGATGATTATCATCAAAAAT
GTAATCGATGACTGCAGATTATACCTGACTAGATTGGGAAACACAACGATTCAGTGTATCTGCAAAGAAGCTAACCAGTTGGTGGACACACTAGCTAAGC
ATGGAAGCAAAATCCAAGTTTTTGGTTTACATTTGTACTATGATATACTGCCATCTTTTGTATTATTTACTTATGAATCAAATAAGAAATCCTATCCCTA
GGAAGGTCAAAGCTTGTAATAGTTTCTATATTTTACTAATAATACATCCCAATAATCAAAAGAAATAAAAGGCTGTCCTGGCAGCATATACAAAAGGCTA
ATAGAGCTGAAAAGCAATAGTTTGAGTACTTCTCCCAGATACAACAACATTAGGATTAAACCCAAACGAGTTCGAAATTCTTCCCAGGTATGTAGTATAA
GGTTTTGCTATGGAACTGTCAGCATCAAGTT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.961067
Expected error %
0.577076
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At2g26780.1 Score 69 E Value 4e-12 Identity 23.60% Align. Length 143bp (17.21%) Frame 3
68415.m03212 expressed protein contains Pfam profile TBP (TATA-binding protein) -interacting protein 120 (TIP120); contains TIGRFAM profile TIGR01612: reticulocyte binding protein
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0152M18
Clone
Clone name
hba-152m18
LE_HBa0152M18
C12HBa0152M18
P152M18
Clone type
BAC
Contamination
none
Estimated length
54,050
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found