Clone Read LE_HBa0034B23_SP6_7388

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0034B23_SP6_7388
Primer
SP6
ID from Seq. Facility
LE_HBa_034_B23-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
578 trimmed for vector and quality, 758 raw
Genbank Accession
DU026736
Sequence
>LE_HBa0034B23_SP6_7388 (raw untrimmed)
AAAAAACCTTTGAAGTCTTGCATGAATTTTGCTCGAAAAAAAAACCCTTTTCTGCAGAATGTGGTTTATTTGATCTTAAATTGGGGCCCCTCATATTTAA
ATCTAAAGAAGTCAGCAATGGCAGATTGATGACATTGAGGATCTACTGATGGAGGATTTTCGATCTATTATGTTCTTCTTTGCTGGAGACGAGAGCCATT
GCTGACAATTCTACATCTTTATCAAACTTTAGGGTTAAGGTTCAATAGAAGATGTCAGGCTAACAATAACATAGCAGAAAATTTCTAGATTATTCACTTC
AAATCAAGATCATAGAACTCCTACTACAAGCTAGAGCATCAAAAGTTATGATATCTAATTATTGACATACACCATGATAAATCCATATGAGAACGCGAAA
ACATAAAAATAATTATAATGAAAAAAATATAAAAAGAATTACCAGGTCAAGGACATGAACAAGGGACTTAATTCCATTTTCATCCATGGATTGTATATGT
TCCTCCACCCATTTTCCAAGAACAAGGTCTAGCTCCAGGTAACCTCTCTGTTTACTACGATAAATAAGCCTATTTACATAACAAAATAAAAACACCATTA
AGATATCATGAACCACTCCGCCGCCCAGAGGATCATATAACCCAGAGTCTCACCTATCGAAAAATAAAAAACTCCAAATTCACCCGTTAAACAAACGTCT
TTTTGCTCCCTTCGTCGGAAAAATCGATATTCATCGGCGATGAAGTCTTCATTAGAAG
>LE_HBa0034B23_SP6_7388 (trimmed for quality and cloning vector)
TGTGGTTTATTTGATCTTAAATTGGGGCCCCTCATATTTAAATCTAAAGAAGTCAGCAATGGCAGATTGATGACATTGAGGATCTACTGATGGAGGATTT
TCGATCTATTATGTTCTTCTTTGCTGGAGACGAGAGCCATTGCTGACAATTCTACATCTTTATCAAACTTTAGGGTTAAGGTTCAATAGAAGATGTCAGG
CTAACAATAACATAGCAGAAAATTTCTAGATTATTCACTTCAAATCAAGATCATAGAACTCCTACTACAAGCTAGAGCATCAAAAGTTATGATATCTAAT
TATTGACATACACCATGATAAATCCATATGAGAACGCGAAAACATAAAAATAATTATAATGAAAAAAATATAAAAAGAATTACCAGGTCAAGGACATGAA
CAAGGGACTTAATTCCATTTTCATCCATGGATTGTATATGTTCCTCCACCCATTTTCCAAGAACAAGGTCTAGCTCCAGGTAACCTCTCTGTTTACTACG
ATAAATAAGCCTATTTACATAACAAAATAAAAACACCATTAAGATATCATGAACCACTCCGCCGCCCAGAGGATCATA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.948095
Expected error %
0.325031
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g51040.1 Score 70 E Value 8e-13 Identity 26.30% Align. Length 113bp (19.55%) Frame 1
68418.m06327 expressed protein
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAM64715.1| Score 70 E Value 3e-11 Identity 26.30% Align. Length 113bp (19.55%) Frame 1
unknown [Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
dbj|BAB08750.1| Score 70 E Value 3e-11 Identity 26.30% Align. Length 113bp (19.55%) Frame 1
unnamed protein product [Arabidopsis thaliana] ref|NP_199917.1| expressed protein [Arabidopsis thaliana]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0034B23
Clone
Clone name
hba-34b23
LE_HBa0034B23
C03HBa0034B23
P034B23
Clone type
BAC
Contamination
none
Estimated length
103,879
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found