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Clone Read LE_HBa0147M03_SP6_73156

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0147M03_SP6_73156
Primer
SP6
ID from Seq. Facility
LE_HBa_147_M03-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
651 trimmed for vector and quality, 814 raw
Genbank Accession
DU065646
Sequence
>LE_HBa0147M03_SP6_73156 (raw untrimmed)
GGTTTTTCTCCAGATCTTTTGAGTTGTTCTTTCAGTTCTTTTAATTCTGCTGGTGCCATTCTATATGGCGGAATAGAGATAGGACGAGAATCTGGGATGA
CATCTATGACGAAGTCTATCTCTATTTTGAGAGGGATTCCGGGTAGATCATCAGGAAAGACATCTGGGAACTCACTGACTATAGGAACTGACGTAATGGA
CGGTACCTCAACACTTGAGTCGTTAACTCGGACTAAGTGATAGATACATCCCCTAGAAACTAACTTCCTCGCCTTAAGGTTTGAAATAAACGACCCTTAG
GCACTTTTGAACTACTATCCCACTCTATGACTGACTTATTTGGAAACAAAACTGGAACTTGACAATTTGAGTTCTGCAATCTATTGATGAATAACATGCT
TGGAGCCAGTCCATACCTAGAATGACATCAAAATCTACCATATCTAACTCTATCAAGTCAACCATGGTGCTCTTCTGATTGATGGAAACAAGACAATCAC
AATAGACTCTTTCCGCTAGAATAGACTCCCTAAGAGATGTAGAAACATAGAAAGGTTCACAAAGCTTTTCAGGGAGAATTTCAAACTAATTTTGAAACAT
TAGGAGTTACAAAGGATAAACTGGTTCTTGGGTATAATTAAAGCATAAACATCGAAACTAAAGACTTTGATAATACCCGTGACATCATCTGGAGAGTTCT
CTTGCCTTTTGGCGTTCTAGTAATTGCCATGAAGGCGATTTGCCCCTCCCGCCGGTACTAAATTTACCTCCTCTGGGTGGCACCCCTAATTTGGTGGAAC
AAACAAATTAATAT
>LE_HBa0147M03_SP6_73156 (trimmed for quality and cloning vector)
TTTGAGTTGTTCTTTCAGTTCTTTTAATTCTGCTGGTGCCATTCTATATGGCGGAATAGAGATAGGACGAGAATCTGGGATGACATCTATGACGAAGTCT
ATCTCTATTTTGAGAGGGATTCCGGGTAGATCATCAGGAAAGACATCTGGGAACTCACTGACTATAGGAACTGACGTAATGGACGGTACCTCAACACTTG
AGTCGTTAACTCGGACTAAGTGATAGATACATCCCCTAGAAACTAACTTCCTCGCCTTAAGGTTTGAAATAAACGACCCTTAGGCACTTTTGAACTACTA
TCCCACTCTATGACTGACTTATTTGGAAACAAAACTGGAACTTGACAATTTGAGTTCTGCAATCTATTGATGAATAACATGCTTGGAGCCAGTCCATACC
TAGAATGACATCAAAATCTACCATATCTAACTCTATCAAGTCAACCATGGTGCTCTTCTGATTGATGGAAACAAGACAATCACAATAGACTCTTTCCGCT
AGAATAGACTCCCTAAGAGATGTAGAAACATAGAAAGGTTCACAAAGCTTTTCAGGGAGAATTTCAAACTAATTTTGAAACATTAGGAGTTACAAAGGAT
AAACTGGTTCTTGGGTATAATTAAAGCATAAACATCGAAACTAAAGACTTT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.955668
Expected error %
0.256145
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39297.1| Score 152 E Value 2e-72 Identity 80.20% Align. Length 650bp (99.85%) Frame 2
putative gag-pol protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 151 E Value 1e-72 Identity 78.30% Align. Length 650bp (99.85%) Frame 2
putative retrotransposon protein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0147M03
Clone
Clone name
hba-147m3
LE_HBa0147M03
P147M03
Clone type
BAC
Contamination
none
Estimated length
91,498
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found