Clone Read LE_HBa0147C11_T7_72693

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0147C11_T7_72693
Primer
T7
ID from Seq. Facility
LE_HBa_147_C11-T7
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
659 trimmed for vector and quality, 930 raw
Genbank Accession
DU065274
Sequence
>LE_HBa0147C11_T7_72693 (raw untrimmed)
GGGTGACTGGGGACCCGGGGGACCTCTAGAGTCGACCTGCAGGCATGCAAGCTTTGGAATGGTTTACATCTCATGAGACCAGACAGTGTCCCAGTTGAAT
GCTTTGGCTAAAAAAAATTCGAACGGTTTTCCTAAAATGTAGAGATTTTCCCTGATTGTTATTCTTCAAAAAATATTTAACAAAAGTCCAACAAAATATA
CAGAGAGTTATCGTATAATTGGCAGAAGGAAGCAGCTAAAGTGCGGCCTCCTATGTCCGAAAAGGAGATAGTTGAAGTTTTTGTACGGGTACAATATCCT
GAATACTATGATAGAATCATATTGCTCGTTAGAGCAAAATTTGCTAAAATAGTCAAGGTTGGTGAGACTATTGAAGATGGGTTGAAAATCGGGAAGATTG
CTCATGTTGTTGCGTCACCTAAATCATCAGGTTTGTTGAACAAGAAATGAGAATATGTTTCTGCTATCTCTTACAAGGGGAGGAAGACCCCCAGAAGATA
ATCATCCTACAAAGGTCGCCCTTGACCCTCCTAAAATTCTTACCAGGCTTGCTACACGCAAGCTAGTCATCCAAATACTCCTCCTTCTGTCTACCAAAAT
TCTACCTGCACATACCCAAATGCCCTCCCTACAAATTAACAAAATTCATATCCTGTTTACAAAACTCTCCCCCACTTTACAAAATTTCATCTCCCATTTC
CCAAATACTGGTCTTAACTGGCCAATGTGCAGTCAAACTAACAAGCAACCCCACTACTATATCAAGTCCAAGCTCCAGTACACTAAAATGCCCCCATGAA
TACCCAACTCCATCACCAAATTACCAAACAATCCTTTATCAAAATATCAAACTCCCCTCCCAATACCCCAAAATTATAACAGAGCCCCCCCCCAATAAGG
AGTATGATCCCCCTGACCAAATTCAAAAAA
>LE_HBa0147C11_T7_72693 (trimmed for quality and cloning vector)
AGCTTTGGAATGGTTTACATCTCATGAGACCAGACAGTGTCCCAGTTGAATGCTTTGGCTAAAAAAAATTCGAACGGTTTTCCTAAAATGTAGAGATTTT
CCCTGATTGTTATTCTTCAAAAAATATTTAACAAAAGTCCAACAAAATATACAGAGAGTTATCGTATAATTGGCAGAAGGAAGCAGCTAAAGTGCGGCCT
CCTATGTCCGAAAAGGAGATAGTTGAAGTTTTTGTACGGGTACAATATCCTGAATACTATGATAGAATCATATTGCTCGTTAGAGCAAAATTTGCTAAAA
TAGTCAAGGTTGGTGAGACTATTGAAGATGGGTTGAAAATCGGGAAGATTGCTCATGTTGTTGCGTCACCTAAATCATCAGGTTTGTTGAACAAGAAATG
AGAATATGTTTCTGCTATCTCTTACAAGGGGAGGAAGACCCCCAGAAGATAATCATCCTACAAAGGTCGCCCTTGACCCTCCTAAAATTCTTACCAGGCT
TGCTACACGCAAGCTAGTCATCCAAATACTCCTCCTTCTGTCTACCAAAATTCTACCTGCACATACCCAAATGCCCTCCCTACAAATTAACAAAATTCAT
ATCCTGTTTACAAAACTCTCCCCCACTTTACAAAATTTCATCTCCCATTTCCCAAATAC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
5' read, flanking vector found
Quality trim threshold
12.5
Sequence entropy
0.966721
Expected error %
0.442693
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU89777.1| Score 142 E Value 9e-33 Identity 19.30% Align. Length 404bp (61.31%) Frame 1
gag-pol polyprotein-like [Solanum tuberosum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39964.1| Score 87 E Value 4e-16 Identity 12.80% Align. Length 326bp (49.47%) Frame 1
putative gag polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0147C11
Clone
Clone name
hba-147c11
LE_HBa0147C11
P147C11
Clone type
BAC
Contamination
none
Estimated length
109,224
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found