Clone Read LE_HBa0033M17_SP6_7136

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0033M17_SP6_7136
Primer
SP6
ID from Seq. Facility
LE_HBa_033_M17-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
559 trimmed for vector and quality, 956 raw
Genbank Accession
DU026502
Sequence
>LE_HBa0033M17_SP6_7136 (raw untrimmed)
TTCAGGCGCTGCAACTTTTCTTCCTTCCTTGCTGCATCTTCTGTTCCACTTCTTGCTGAGTCTCTTTCTTCATCTTGTTCAATGCTGCTGATATCTCAGC
CCTTGCAGCCTTCATAATTGCAGCAGCTTGGTCTTCCAGTTGCTTCACTTCAGTAGATGTGTCCTTTACACTGCTAAGTTTCTCCTTAATAGCAGAATCT
CTTTCATCCATGAATTTCCCTAATGGGCTGAAGTAAATCTTGTCTAAAGCAAACATGAGAAACAGGAATTCAGCCATCATGGTGGGAAGTGTCAAGTTGA
AGTCAAAAAGGGAAGCTTTTTCAATTTCTTCTGCTAGTGAAGGTGGTGCAATAGCCAATGAGCTTGCAAGAATGACTGAAATGGACTTGAGAGTTGATGG
GATTGAGAGGGTTTCAAGGGATTTGGGTGATCTGGGGAGGGGTAGTTTTGGAAAAGGGATTTGGGTGAGGGAAAGTTTGAATCTTGGAGATGAAGGGATG
GTGGAGGATGAAGAAGTGATTAAGGTTTTGGAGGAGCTCATAATCATGTTGGCCATGGCTTCTTAGAACTTGGGATTTTTTTTAGAGGATTTGATTCCTG
ATTTTATTTTTCTTGGGTGGTTTGAGAAGGGGAAATGGAAAATCTTAGAAAGGCAATCTCAACTCTTGTAACCTATATTGGAGAAGGCGAAAAAGGATGT
GCCACTAAACAGCTCCTTGTTCTTTTTTCAGAGAGTTCTTCTTTAGATATTCAATGTAAACCAAGGTTTTTGGTTCTTGGATATCCAAAAAGGTAATTGA
TTGGGAACTAACCTTTTGCATTTGTTCACATGGGGAGAATGAAAGATTGTAATATGATACATCATAATAAATCCAAAACCACATGGGTAACCTGGTTCTA
TTCATTGTTAAGCAACAGCATGGGTCATCGTGGAGAACGTGAATTACATTTCGAAT
>LE_HBa0033M17_SP6_7136 (trimmed for quality and cloning vector)
ATCTTCTGTTCCACTTCTTGCTGAGTCTCTTTCTTCATCTTGTTCAATGCTGCTGATATCTCAGCCCTTGCAGCCTTCATAATTGCAGCAGCTTGGTCTT
CCAGTTGCTTCACTTCAGTAGATGTGTCCTTTACACTGCTAAGTTTCTCCTTAATAGCAGAATCTCTTTCATCCATGAATTTCCCTAATGGGCTGAAGTA
AATCTTGTCTAAAGCAAACATGAGAAACAGGAATTCAGCCATCATGGTGGGAAGTGTCAAGTTGAAGTCAAAAAGGGAAGCTTTTTCAATTTCTTCTGCT
AGTGAAGGTGGTGCAATAGCCAATGAGCTTGCAAGAATGACTGAAATGGACTTGAGAGTTGATGGGATTGAGAGGGTTTCAAGGGATTTGGGTGATCTGG
GGAGGGGTAGTTTTGGAAAAGGGATTTGGGTGAGGGAAAGTTTGAATCTTGGAGATGAAGGGATGGTGGAGGATGAAGAAGTGATTAAGGTTTTGGAGGA
GCTCATAATCATGTTGGCCATGGCTTCTTAGAACTTGGGATTTTTTTTAGAGGATTTGA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.929058
Expected error %
0.285322
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At4g32260.1 Score 132 E Value 9e-32 Identity 22.10% Align. Length 293bp (52.42%) Frame 1
68417.m04590 ATP synthase family contains Pfam profile: PF00430 ATP synthase B/B' CF(0); identical to cDNA chloroplast ATP synthase beta chain precursor (atpG) GI:5730140
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAA50520.1| Score 136 E Value 3e-31 Identity 23.80% Align. Length 293bp (52.42%) Frame 1
CF(o)II ATP synthase subunit 9 [Spinacia oleracea] pir||S34473 H+-transporting two-sector ATPase (EC 3.6.3.14) chain 9 - spinach sp|P31853|ATPX_SPIOL ATP synthase B' chain, chloroplast precursor (Subunit II)
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
emb|CAB79944.1| Score 132 E Value 4e-30 Identity 22.10% Align. Length 293bp (52.42%) Frame 1
H+-transporting ATP synthase chain 9-like protein [Arabidopsis thaliana] emb|CAA16964.1| H+-transporting ATP synthase chain9 - like protein [Arabidopsis thaliana] gb|AAM63254.1| H+-transporting ATP synthase chain 9-like protein [Arabidopsis thaliana] emb|CAB52473.1| ATP synthase beta chain precursor (subunit II) [Arabidopsis thaliana] ref|NP_194953.1| ATP synthase family [Arabidopsis thaliana] gb|AAL24209.1| AT4g32260/F10M6_100 [Arabidopsis thaliana] pir||T05402 H+-transporting two-sector ATPase (EC 3.6.3.14) chain 9 - Arabidopsis thaliana
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0033M17
Clone
Clone name
hba-33m17
LE_HBa0033M17
P033M17
Clone type
BAC
Contamination
none
Estimated length
108,301
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found