Clone Read LE_HBa0138F21_SP6_70552

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0138F21_SP6_70552
Primer
SP6
ID from Seq. Facility
LE_HBa_138_F21-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
1 trimmed for vector and quality, 1169 raw
Sequence
>LE_HBa0138F21_SP6_70552 (raw untrimmed)
CCGACACAAGATCTCCCCAGGACGCGGGCAGCTCCTAACTCCACGTGCACACCTAGCCATCAGCACCTCCGAGTAACACAAGCGCACTATGCGGCCACAA
GTTATAATCCCCTGTGTGGGAGAGACCACCCCTCTCACTCTNCACCATACTGATATATCAATACACGCCCCTTTCCGCGGCGCTTCCCCCTCCCACACAA
GCGGGGAGGGCCAACTAACTGATACGCTGCGCAGACGCCATACGGACAACGAGNGACTAGAGACGACCGTGCCCTGGACGACGCCAGGGCAATGGGTGAA
CGACTCCCGCCACCCTCCCTCACGTCCCAAATCACCCGCCCTCCACATATGATCTATTTAATTCTTATGTATAAATCAACCCTCTTCCCGTCATACCAGT
AAATCAAGATACAACAATATATAAGCCTACCACCGCTCACTGAGCAAAGGAAAGCTACCTTCATGCAGCACCCTACGACCGACCAAGCATCACAGTGTTA
ACACGACATGACAATGGATATACCCACTAACACAGATCTGAGTTATTACTAGAAACAGCGCACCACGATATCTGGTATACAACTCTGCGATACTACGTGA
TCTAGTGACTTCAGAATGCGAGTGTCCACGGGCGACCAACATGACACCACAATACAAGTAGGAAATAGCACTATGACCACACTGCAAAGCCACATCTGCT
CGTTGGTATCTGCTAATGTGATGTCATCAGAGCTCATCCTTACACGCATTCGATGAGAACGACAGTTGTACAGGCTGATTCCTAACCTAATCTGTCTCCA
TCTTAATTCTACGTCAACCACCAAGTGCCCAATGGCCACCCTCCCCACAGGCGACTCTCGTCGAAAGGCCACGCCTGACGAGCGATCGACCTCTAGTCAC
GGACGTAGCATCTATAGACTTACTGTCAGCTAAAAACCAGTAGTATAACTCACAACAGACCAACAAAGAATACAACCCAAACCCGTACATCAATCCTGAC
CGCTATATGACACACACTCCCTACACGACCTACTAACCTGGAACCACTCACACTGTCACGCAGTGCTACCATTTGGTTACACTGCATCCAAAGTACCAGC
TAATTTGAACCATCCAGGTCTACCACCAGCGTACGGTCCTGTCCCGCCCCCCGGCTGCCCTATGATCCC
>LE_HBa0138F21_SP6_70552 (trimmed for quality and cloning vector)
C

This is probably not a useful sequence.

Problems:
  • Short cloning insert
  • Low complexity
  • High predicted error rate
 Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
not recorded
Expected error %
100
Sequence Annotations 
Automatic Annotations
No automatic annotations found.
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0138F21
Clone
Clone name
hba-138f21
LE_HBa0138F21
C12HBa0138F21
P138F21
Clone type
BAC
Contamination
none
Estimated length
78,504
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found