Clone Read LE_HBa0128G06_SP6_69034

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0128G06_SP6_69034
Primer
SP6
ID from Seq. Facility
LE_HBa_128_G06-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
571 trimmed for vector and quality, 824 raw
Genbank Accession
DU074076
Sequence
>LE_HBa0128G06_SP6_69034 (raw untrimmed)
GTTAGCTGGGGTATGCTTATTGACCATGTCCCCGAGGGGAGTGTCATTTCAAATCCAAAGATGCCTATCGCGTCTGTAATGGTGGTGAATGAATTGCTGA
AACATGGGTTTGAGCCAGGTAAAGGCTTAGGAATCTGCTTGCAAGGGAGAGCTTATCCATTGAGTCTATGAAAGAGCATCGGTACTTTTGGATTAGGCTA
CCAACCTAGAGTCGAGGGAAATAAAGTAAAAGAAGAAGAAGAGAGATGTATGGTCACTTACCAAGCCTATACAACCAATCTACAAATCTTTCATCAAAGC
CCGCGCAACAAAATCTTATCATTCATTTTTTCCAGAGCAATGATGAAAGTAAGCGAATAAATGATCAACTATTTTCAAGATTTATTTGTCGAGGTTGATA
TGGTGGAACTCGGAGAAGGCACTAGCGACAGAGATGTGCAATTCATTGGTCCTGATGTCAAGCTAAACAATTGGGAGGCCACCCTTCTCCCCATTAAAGA
CGAGTATTGGTAGTCTGTCTTGTTTTTATTTTTATCGTCCGATTCATTCGAGGATTGTAATTTGGATTTTATCCTGTCGTTTTATTTCAAATATTCTACT
TCCCTTTTCAATAGGATGTAATATCATCTTTTTTTTTAGTCTAATGTATTTGTTCGTTTTCTTCTATTACAGTTCCCTTCAATGCCCATTTCTATTGATA
TGACATTGCATGCAAATAATTTTCTCCATATCTTTATTTCCAATCTACCCTTAGACCCTATTATTGATATAATAATGTCCATAAATCCAATTTTGGTGCT
AAACAGTGTTTCTTTGTTGGAATG
>LE_HBa0128G06_SP6_69034 (trimmed for quality and cloning vector)
GGGAGTGTCATTTCAAATCCAAAGATGCCTATCGCGTCTGTAATGGTGGTGAATGAATTGCTGAAACATGGGTTTGAGCCAGGTAAAGGCTTAGGAATCT
GCTTGCAAGGGAGAGCTTATCCATTGAGTCTATGAAAGAGCATCGGTACTTTTGGATTAGGCTACCAACCTAGAGTCGAGGGAAATAAAGTAAAAGAAGA
AGAAGAGAGATGTATGGTCACTTACCAAGCCTATACAACCAATCTACAAATCTTTCATCAAAGCCCGCGCAACAAAATCTTATCATTCATTTTTTCCAGA
GCAATGATGAAAGTAAGCGAATAAATGATCAACTATTTTCAAGATTTATTTGTCGAGGTTGATATGGTGGAACTCGGAGAAGGCACTAGCGACAGAGATG
TGCAATTCATTGGTCCTGATGTCAAGCTAAACAATTGGGAGGCCACCCTTCTCCCCATTAAAGACGAGTATTGGTAGTCTGTCTTGTTTTTATTTTTATC
GTCCGATTCATTCGAGGATTGTAATTTGGATTTTATCCTGTCGTTTTATTTCAAATATTCTACTTCCCTTT

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.962326
Expected error %
0.488209
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39963.1| Score 175 E Value 7e-43 Identity 19.20% Align. Length 467bp (81.79%) Frame 2
putative polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAU90285.1| Score 151 E Value 9e-36 Identity 17.90% Align. Length 467bp (81.79%) Frame 2
putative gag/pol polyprotein, 3'-partial [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0128G06
Clone
Clone name
hba-128g6
LE_HBa0128G06
P128G06
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found