Clone Read LE_HBa0105P07_SP6_68700

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0105P07_SP6_68700
Primer
SP6
ID from Seq. Facility
LE_HBa_105_P07-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
445 trimmed for vector and quality, 888 raw
Sequence
>LE_HBa0105P07_SP6_68700 (raw untrimmed)
CTTAAGGTCCCTTAACTCCTTTCCCGGAGGGACCAGACGGCTATGCTTTTTATTGGTGATTCTTTGGGTGTTGGGCTAGGATGTGTATTGATGCAGCATG
GCAAAGTTATAGCCTATGCCTCCCGACAACTTAGGAAGCATGAAAAGAACTATCCTACTCACGATCTGGAGTTAGCGGTCGTGGTTCATGCCTTGAAGAT
ATGGAGACATTATTTATATGGTGTCCATGTGGACATCTATACAGATCATAAGAGTCTCCAATATATCTTTAAACAGAAGGAGCTGAACTTACGACAGAGG
CGGTGGTTAGAGTTTCTAAAGGATTATGATGTTGATATTTTATATCATCCAGGGAAAGCGAATGTTGTAGCAGATGCTCTTAGCCGTAAGTCCATGGGTA
GCTTGACAGATGTTACAACCAGAAGAGAGGGATATGGTTTGGGAGATTCAGCGGCTATCCCGCCTTGGAGTCCGTCTAGCTAATTCCCAAGATAGTGGAA
TTTCTTTTCTAGAGGTCGCGGAGTTCTCAATCACTAAATGAGGTAACGTAGCCACCAAGCTAACGGCCCTCCTCCGGCCCAAGTTAACGATGCTCCCTTT
TTAAAATTCCTAACTCCTTTTTTTGGTGTGTTTCTTTTTGTTGTTTTCTATTTTCCTGTTAATCATTCGTACACTAATTTCTTATCATTTCACTTCCATT
TAATACTATACTATATTTTGATCTTCGCATTTTCACTTTGAGCTATTTATACGGTTCTATCTCTAAATCTTCACACTCATAATTGCACAGTACATTATCA
AAATAGGTTATTTTAATACATTTCAACTAATTTACTTTTCATACTCTACCTTTAACCTGTGTCATATCCTATCCTCTATTTTTTTTTT
>LE_HBa0105P07_SP6_68700 (trimmed for quality and cloning vector)
GAGGGACCAGACGGCTATGCTTTTTATTGGTGATTCTTTGGGTGTTGGGCTAGGATGTGTATTGATGCAGCATGGCAAAGTTATAGCCTATGCCTCCCGA
CAACTTAGGAAGCATGAAAAGAACTATCCTACTCACGATCTGGAGTTAGCGGTCGTGGTTCATGCCTTGAAGATATGGAGACATTATTTATATGGTGTCC
ATGTGGACATCTATACAGATCATAAGAGTCTCCAATATATCTTTAAACAGAAGGAGCTGAACTTACGACAGAGGCGGTGGTTAGAGTTTCTAAAGGATTA
TGATGTTGATATTTTATATCATCCAGGGAAAGCGAATGTTGTAGCAGATGCTCTTAGCCGTAAGTCCATGGGTAGCTTGACAGATGTTACAACCAGAAGA
GAGGGATATGGTTTGGGAGATTCAGCGGCTATCCCGCCTTGGAGT

Warnings:
  • Not screened for chimera
  • Not screened for repetitive elements
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.970758
Expected error %
0.501635
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 208 E Value 3e-53 Identity 26.80% Align. Length 368bp (82.70%) Frame 3
putative gag-pol polyprotein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38724.1| Score 206 E Value 2e-52 Identity 26.60% Align. Length 368bp (82.70%) Frame 3
putative retrotransposon protein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0105P07
Clone
Clone name
hba-105p7
LE_HBa0105P07
P105P07
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found