Clone Read LE_HBa0105I04_SP6_68358

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0105I04_SP6_68358
Primer
SP6
ID from Seq. Facility
LE_HBa_105_I04-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
597 trimmed for vector and quality, 885 raw
Sequence
>LE_HBa0105I04_SP6_68358 (raw untrimmed)
AAACTTTAAAAACTAAGTCATAACCAACATAGCTCTTAAGAGAGCACTTCTACAACCATCTCTTAGGATCCAACACCTGTAATGTGTAACAGAAGTCTCA
TACCCTCCCTTTTACTATGTAGAACCCCTTAAGAAATCCCTAGTGGGAGTTTATACATTTCATTCATTAGTTTAATTTTTCAATAGAGTAAAGGTTTCAA
TAACTGTCATATACCATGTGAGATACATATTCTTGGGACCAAAATAGTGTATGATCCCATGGAAAAGGTTTGAATCACAAGAGAGAGGTTGAAAACATCT
TATAGTCGGCAAAATTCTTATCTCTACAGTAGAAATAGGGACCTTGAATTTAAAGTAGGAGATTGGGTCTCTTTGAAAATTTCATCCAAGGGTTGATCGG
GTTTGGAAAGAAGCAGAAACTTAGTCCCCGTTATGTTGGCCCTTACGTGATTTTAAATAGGGTAAGGGATGTGGCCTTGGCTCATCTAATGTTCCATGCG
TCCATGCCGAGAAGTGTATAGCTGATCTAGTGTCAATTATCCCTCTAGATGGTTTATTGGTAAAGGAGTATCTTTCTTCTGAGGAGGTCCCGTTTGAGAT
CTTAGATCACCAAGTTAATAAATTGAGGAAAAAGTATGTTGCCTCCATAAAATTTCTTTGGAGGAACCACCTTGTTAAGGGCGAAACATGGAAGGCTGAA
CGTTGACATCAAGACCTCTATGCTCACATTCTCCCCCCTCTCCCTACAAAAATTAAAGTTAGTAGGTACTTCTATAAGAAGTCATAGGATAAATGCAAAA
GGTATATGGTTTCAATGTATCCTATGAACCGCCTAAATTCTATATCTTTTTTATTTTTTCATAACCTTTTTCTGGCGTCCAATCT
>LE_HBa0105I04_SP6_68358 (trimmed for quality and cloning vector)
CTTAAGAGAGCACTTCTACAACCATCTCTTAGGATCCAACACCTGTAATGTGTAACAGAAGTCTCATACCCTCCCTTTTACTATGTAGAACCCCTTAAGA
AATCCCTAGTGGGAGTTTATACATTTCATTCATTAGTTTAATTTTTCAATAGAGTAAAGGTTTCAATAACTGTCATATACCATGTGAGATACATATTCTT
GGGACCAAAATAGTGTATGATCCCATGGAAAAGGTTTGAATCACAAGAGAGAGGTTGAAAACATCTTATAGTCGGCAAAATTCTTATCTCTACAGTAGAA
ATAGGGACCTTGAATTTAAAGTAGGAGATTGGGTCTCTTTGAAAATTTCATCCAAGGGTTGATCGGGTTTGGAAAGAAGCAGAAACTTAGTCCCCGTTAT
GTTGGCCCTTACGTGATTTTAAATAGGGTAAGGGATGTGGCCTTGGCTCATCTAATGTTCCATGCGTCCATGCCGAGAAGTGTATAGCTGATCTAGTGTC
AATTATCCCTCTAGATGGTTTATTGGTAAAGGAGTATCTTTCTTCTGAGGAGGTCCCGTTTGAGATCTTAGATCACCAAGTTAATAAATTGAGGAAA

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.963171
Expected error %
0.166713
Sequence Annotations 
Automatic Annotations
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT39297.1| Score 55 E Value 3e-18 Identity 52.00% Align. Length 387bp (64.82%) Frame 1
putative gag-pol protein [Solanum demissum]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAT38744.1| Score 54 E Value 3e-13 Identity 52.00% Align. Length 256bp (42.88%) Frame 1
putative gag-pol polyprotein [Solanum demissum]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0105I04
Clone
Clone name
hba-105i4
LE_HBa0105I04
C12HBa0105I04
P105I04
Clone type
BAC
Contamination
none
Estimated length
95,091
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found