Clone Read LE_HBa0033F13_SP6_6792

Sequence Read 
Read Class
BAC ends
Read ID
LE_HBa0033F13_SP6_6792
Primer
SP6
ID from Seq. Facility
LE_HBa_033_F13-SP6
Chromatogram
[download]
Sequence 
Version
1 (current)
Length (bp)
695 trimmed for vector and quality, 977 raw
Genbank Accession
DU026193
Sequence
>LE_HBa0033F13_SP6_6792 (raw untrimmed)
CTTGGTATATCTACATATGTCTGTCTTGCTAAATGAAGAACAACAAATTTACTGAAATCAACGTTAATATTCCACCAAGCATAAATCAATCTGATCACGA
ACAACACCAGTTAGAAATTGGAGCAAACATGAAATTGATCCAGTCTCCACAGATGATGATTCAAAATAGTCAATTGCAGAGCTCTCATCATGAGTTTGCA
CACTCTACTAGTAGTGTCTATCATCTGCCATTTGACGGAGCTACTTCTGTTTCTGGATTCAAATCGTGGTTACGCCAGGCTTCTGTTGCTGCACCATTAA
TGTCGTCAGCTGAAGAAATTGTAAATCCTAGCAATTGCCAGGCGCTCTCGCTTGCAGCCGCTCCCAAAAAACGGCCGGTAGCAGTTAAAAATGGTGGTGG
TTCAAAGGAATCAGTTCCGCGCAAATCCATTGATACTTTTGGGCAAAGAACTTCGCAGTACCGCGGAGTCACCAGGTACTAATTCAACTATTTATTTTTT
TTGAAAAAAAAAAATCTACTCTATATTATAGTTATGTTAAAAGCTTGTAAAAAGATATGTTAACCATATTAATTCTAAATCATTTTGAATAATCTTTATT
TAATGAGATGGAATTTGACCAAATTAGACATCGGTGGACTGGAAGATACGAGGCACATTTGTGGGATAATAGTTGCAGAAAGGAAGGGCAAACTAGGAAA
GGCAGACAAGGTGTGTAGTACTGCTTCATTCTCTCACTGTAGTTAGAATAATGTCAGTAGTGGAGTTGATTCTCTACAACTAACCTATGGTCAACGAAAA
AAATTACACTTGAATTAAATTTCAACATTTTACTCCCCAAAAGTTTTTCTTCAAGAATATACAAATTAAACTTTGGTCTTGGTTTTCTTCCCTAATCTTG
GCCTTCCCCCAACATTCCGGATTAATCAGTCCATTCAGGGAAATGACTTTCCCTAATCACATATTGATTTTCGGGCC
>LE_HBa0033F13_SP6_6792 (trimmed for quality and cloning vector)
AGAACAACAAATTTACTGAAATCAACGTTAATATTCCACCAAGCATAAATCAATCTGATCACGAACAACACCAGTTAGAAATTGGAGCAAACATGAAATT
GATCCAGTCTCCACAGATGATGATTCAAAATAGTCAATTGCAGAGCTCTCATCATGAGTTTGCACACTCTACTAGTAGTGTCTATCATCTGCCATTTGAC
GGAGCTACTTCTGTTTCTGGATTCAAATCGTGGTTACGCCAGGCTTCTGTTGCTGCACCATTAATGTCGTCAGCTGAAGAAATTGTAAATCCTAGCAATT
GCCAGGCGCTCTCGCTTGCAGCCGCTCCCAAAAAACGGCCGGTAGCAGTTAAAAATGGTGGTGGTTCAAAGGAATCAGTTCCGCGCAAATCCATTGATAC
TTTTGGGCAAAGAACTTCGCAGTACCGCGGAGTCACCAGGTACTAATTCAACTATTTATTTTTTTTGAAAAAAAAAAATCTACTCTATATTATAGTTATG
TTAAAAGCTTGTAAAAAGATATGTTAACCATATTAATTCTAAATCATTTTGAATAATCTTTATTTAATGAGATGGAATTTGACCAAATTAGACATCGGTG
GACTGGAAGATACGAGGCACATTTGTGGGATAATAGTTGCAGAAAGGAAGGGCAAACTAGGAAAGGCAGACAAGGTGTGTAGTACTGCTTCATTC

Warnings:
  • Not screened for repetitive elements
  • Not screened for chimera
Quality Report
Processed by
SGN
Vector signature
flanking vector not found in read
Quality trim threshold
20.5
Sequence entropy
0.969459
Expected error %
0.258162
Sequence Annotations 
Automatic Annotations
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At5g17430.1 Score 69 E Value 3e-12 Identity 31.00% Align. Length 86bp (12.37%) Frame 3
68418.m02045 ovule development protein, putative similar to ovule development protein aintegumenta (GI:1209099) [Arabidopsis thaliana]
Arabidopsis proteins (TAIR10) (ath/ATH_pep)NCBI BLAST
At3g20840.1 Score 68 E Value 4e-12 Identity 31.00% Align. Length 86bp (12.37%) Frame 3
68416.m02635 ovule development protein, putative similar to ovule development protein AINTEGUMENTA (GI:1209099)[Arabidopsis thaliana]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
ref|NP_915190.1| Score 70 E Value 7e-11 Identity 32.20% Align. Length 86bp (12.37%) Frame 3
putative ovule development protein aintegumenta-like protein [Oryza sativa (japonica cultivar-group)]
NCBI NR non-redundant protein sequence database (genbank/nr)NCBI BLAST
gb|AAL47205.1| Score 70 E Value 7e-11 Identity 32.20% Align. Length 86bp (12.37%) Frame 3
ovule development aintegumenta-like protein BNM3 [Oryza sativa]
Manual Annotations
No manual annotations found.
BAC 
Clone LE_HBa0033F13
Clone
Clone name
hba-33f13
LE_HBa0033F13
C03HBa0033F13
P033F13
Clone type
BAC
Contamination
none
Estimated length
not yet estimated
Library
Name
Tomato HindIII BAC Library
Cloning host
E. coli
Organism
Solanum lycopersicum (formerly Lycopersicon esculentum)
Cloning vector
pBeloBAC11
Accession
Heinz 1706
Restriction enzyme
HindIII

Other Reads:
1 sequencing reads found